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Update CladeSizes.py

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Godwin N. Ani 2025-03-24 15:01:48 -04:00 committed by GitHub
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commit d7577022c4
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Utilities/for_trees/CladeSizes.py
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@ -236,7 +236,7 @@ if __name__ == '__main__':
for tree_file in tqdm(os.listdir(args.input)): for tree_file in tqdm(os.listdir(args.input)):
if tree_file.split('.')[-1] in ('tre', 'tree', 'treefile', 'nex'): if tree_file.split('.')[-1] in ('tre', 'tree', 'treefile', 'nex'):
clades_per_tax, majs_per_clade, mins_per_clade = get_clades(args.input + '/' + tree_file, args) clades_per_tax, majs_per_clade, mins_per_clade = get_clades(args.input + '/' + tree_file, args)
base_filename = os.path.splittext(tree_file)[0] base_filename = os.path.splitext(tree_file)[0]
clades_per_tax_per_file.update({ base_filename : clades_per_tax }) clades_per_tax_per_file.update({ base_filename : clades_per_tax })
majs_per_clade_per_file.update({ base_filename : majs_per_clade }) majs_per_clade_per_file.update({ base_filename : majs_per_clade })
mins_per_clade_per_file.update({ base_filename : mins_per_clade }) mins_per_clade_per_file.update({ base_filename : mins_per_clade })