diff --git a/Utilities/for_taxonomy/readmapping.py b/Utilities/for_taxonomy/readmapping.py index 14711e9..48d005f 100644 --- a/Utilities/for_taxonomy/readmapping.py +++ b/Utilities/for_taxonomy/readmapping.py @@ -1,3 +1,12 @@ +''' +#Author, date: Uploaded by Adri Grow, 2023 +#Intent: map a group of trimmed reads to a reference. +#Dependencies: Python3, hisat2, samtools, sambamba +#Inputs: Folder named 'TrimmedReads' containing all the trimmed reads. +#Outputs: Folders with the names of the LKHs containing the sam/bam files. +#Example: python readmapping.py +''' + #python week 6 #map a group of trimmed reads to a reference #IMPORTANT: Please read commented-out (grey) notes. They will tell you where you need to edit the script.