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Update run_eukphylo.sh

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Adri K. Grow 2025-09-18 15:46:48 -04:00 committed by GitHub
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PTL2/run_eukphylo.sh
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@ -38,12 +38,12 @@ module purge #Cleans up any loaded modules
module use /gridapps/modules/all #make sure module locations is loaded module use /gridapps/modules/all #make sure module locations is loaded
module load slurm module load slurm
module load ETE module load ETE
module load Biopython/1.79-foss-2021b module load Biopython/1.79-gfbf-2023a
module load DIAMOND/2.0.13-GCC-11.2.0 module load DIAMOND/2.1.8-GCC-12.3.0
module load MAFFT module load MAFFT
module load RAxML module load RAxML
module load IQ-TREE/2.1.2-gompi-2021b module load IQ-TREE/2.1.2-gompi-2021b
module load tqdm/4.64.1-GCCcore-12.2.0 module load tqdm/4.66.1-GCCcore-12.3.0
module load Python/3.9.6-GCCcore-11.2.0 module load Python/3.9.6-GCCcore-11.2.0
module load Guidance_mid #Smith College HPC specific module load Guidance_mid #Smith College HPC specific
export PATH=$PATH:/beegfs/fast/katzlab/grid_phylotol_setup/programs/standard-RAxML-master #Smith College HPC specific #export PATH=$PATH:/Path/To/Executable/Files export PATH=$PATH:/beegfs/fast/katzlab/grid_phylotol_setup/programs/standard-RAxML-master #Smith College HPC specific #export PATH=$PATH:/Path/To/Executable/Files