diff --git a/PTL1/Transcriptomes/Scripts/wrapper_submit.sh b/PTL1/Transcriptomes/Scripts/wrapper_submit.sh index ed90f2f..65e1a7d 100644 --- a/PTL1/Transcriptomes/Scripts/wrapper_submit.sh +++ b/PTL1/Transcriptomes/Scripts/wrapper_submit.sh @@ -13,16 +13,16 @@ module purge #Cleans up any loaded modules module use /gridapps/modules/all #make sure module locations is loaded module load slurm -module load tqdm -module load Biopython/1.75-foss-2019b-Python-3.7.4 -module load BLAST+/2.9.0-gompi-2019b -module load DIAMOND/0.9.30-GCC-8.3.0 -module load VSEARCH/2.21.1-GCC-10.3.0 +module load tqdm/4.62.3-GCCcore-11.2.0 +module load Biopython/1.79-foss-2021b +module load BLAST+/2.12.0-gompi-2021b +module load DIAMOND/2.0.13-GCC-11.2.0 +module load VSEARCH/2.22.1-GCC-11.3.0 parent='/beegfs/fast/katzlab/becky/PTL1/Transcriptomes/Forams/' srun -D ${parent}Scripts python3 ${parent}Scripts/wrapper.py -1 1 -2 7 -x --assembled_transcripts ${parent}AssembledTranscripts -o ${parent} -n ${parent}Conspecific.txt --genetic_code Universal & -#srun -D ${parent}HQ/Scripts python3 ${parent}HQ/Scripts/wrapper.py -1 2 -2 7 -x --assembled_transcripts ${parent}Plate4/Assembled_Transcripts -o ${parent}Plate4 -n ${parent}Plate4/Conspecific.txt --genetic_code ${parent}Plate4/Gcodes.txt & +#srun -D ${parent}Scripts python3 ${parent}Scripts/wrapper.py -1 1 -2 7 -x --assembled_transcripts ${parent}Assembled_Transcripts -o ${parent} -n ${parent}Conspecific.txt --genetic_code ${parent}Gcodes.txt > log.out & #srun -D ${parent}HQ/Scripts python3 ${parent}HQ/Scripts/wrapper.py -1 2 -2 7 -x --assembled_transcripts ${parent}Plate7/Assembled_Transcripts -o ${parent}Plate7 -n ${parent}Plate7/Conspecific.txt --genetic_code ${parent}Plate7/Gcodes.txt & #srun -D ${parent}HQ/Scripts python3 ${parent}HQ/Scripts/wrapper.py -1 1 -2 7 -x --assembled_transcripts ${parent}Plate11/Assembled_Transcripts -o ${parent}Plate11 -n ${parent}Plate11/Conspecific.txt --genetic_code ${parent}Plate11/Gcodes.txt & #srun -D ${parent}HQ/Scripts python3 ${parent}HQ/Scripts/wrapper.py -1 2 -2 7 -x --assembled_transcripts ${parent}Plate18/Assembled_Transcripts -o ${parent}Plate18 -n ${parent}Plate18/Conspecific.txt --genetic_code ${parent}Plate18/Gcodes.txt &