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Create run_phylotol_command_line.txt

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MCLeleu 2024-08-14 10:36:09 -04:00 committed by GitHub
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PTL2/Examplar_runs/Running_CLoop/CladeGrabbing/run_phylotol_command_line.txt Normal file
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### Download the Script folder
### than run :
python3 Scripts/phylotol.py --start trees --end trees --data Input --output Output/ --contamination_loop clade --clade_grabbing_rules_file clade_grabbing_rules.txt --clade_grabbing_exceptions exceptions.txt --cl_tree_method iqtree_fast --nloops 1 > log1.out