From dedc315f241917e15718a1a0733e672cdc1d0600 Mon Sep 17 00:00:00 2001
From: "Godwin N. Ani" <aniigodwinn@gmail.com>
Date: Tue, 25 Mar 2025 12:16:55 -0400
Subject: [PATCH] Update guidance.py

---
 PTL2/Scripts/guidance.py | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/PTL2/Scripts/guidance.py b/PTL2/Scripts/guidance.py
index b2ed015..50044ef 100644
--- a/PTL2/Scripts/guidance.py
+++ b/PTL2/Scripts/guidance.py
@@ -62,6 +62,8 @@ def run(params):
 			if nseqs > 2000:
 				too_many_seqs = True
 				#Print if OG has > 2000 seqs
+				guidance_log = open(params.output + '/Output/GuidanceLog.txt', 'w')
+				guidance_log.write(file + 'has more than 2000 seqs.\n Stopping run')
 				print(file + 'has more than 2000 seqs')
 				print('Do you want to run this?')
 				print('Stopping run.')