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Update and rename rename_tip_labels.py to RenameTips_v1.0.py

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Godwin Ani 2024-01-15 15:00:53 -05:00 committed by GitHub
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Utilities/for_trees/rename_tip_labels.py → Utilities/for_trees/RenameTips_v1.0.py
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@ -6,7 +6,7 @@ Dependencies : Python3, Pandas
Inputs : A folder containing trees and a csv file(with headers). Inputs : A folder containing trees and a csv file(with headers).
The first column of the csv is the 10 digit code and other columns are the information to be added to the tip labels. The first column of the csv is the 10 digit code and other columns are the information to be added to the tip labels.
Outputs : A folder of trees with renamed tips. Outputs : A folder of trees with renamed tips.
python3 rename_tip_labels.py -i input to_folder_of_trees -s to_spreadsheet python3 RenameTips_v1.0.py -i input to_folder_of_trees -s to_spreadsheet
''' '''
import os, re, sys, argparse import os, re, sys, argparse