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Update header for new guidance version

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Auden Cote-L'Heureux 2025-04-18 09:09:03 -04:00 committed by GitHub
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PTL2/Scripts/guidance.py
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@ -14,6 +14,11 @@
# that are at least 95% gaps (or --gap_trim_cutoff) generating files in the “Guidance”
# output folder.
# Users should note that there are two version of Guidance. This script, by default, uses
# the newest version (v2.1). Users who wish to use the older version of Guidance will have
# to make a small change in guidance.py (look for a comment in the script with the phrase
# "UNCOMMENT THE FOLLOWING LINE IF USING v2.0.2"). See the Wiki for more information here.
# This step is either intended to be run starting with --start = unaligned (but not raw)
# inputs, meaning one amino acid alignment per OG. It can also be run directly after the
# preguidance step. The run() function is called in two places: in eukphylo.py generally,