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Update Cluster.py

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Godwin Ani 2025-03-21 13:22:21 -04:00 committed by GitHub
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Utilities/for_fastas/Cluster.py
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@ -39,7 +39,7 @@ def main():
parser.add_argument('--type', choices=['aa', 'dna'], required=True, help='Type of sequences (aa for Amino Acids, dna for DNA)') parser.add_argument('--type', choices=['aa', 'dna'], required=True, help='Type of sequences (aa for Amino Acids, dna for DNA)')
parser.add_argument('--identity', type=str, required=True, help='Sequence Identity Threshold (e.g., 0.99, 0.95)') parser.add_argument('--identity', type=str, required=True, help='Sequence Identity Threshold (e.g., 0.99, 0.95)')
parser.add_argument('--overlap', type=str, required=True, help='Sequence Alignment Overlap Value (e.g., 0.67, 0.75)') parser.add_argument('--overlap', type=str, required=True, help='Sequence Alignment Overlap Value (e.g., 0.67, 0.75)')
parser.add_argument('--input', type=str, required=True, help='Input folder containing sequences in fasta format') parser.add_argument('--input_files', type=str, required=True, help='Input folder containing sequences in fasta format')
parser.add_argument('--output', type=str, required=True, help='Output folder for clustered sequences') parser.add_argument('--output', type=str, required=True, help='Output folder for clustered sequences')
args = parser.parse_args() args = parser.parse_args()