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Update and rename gappiness.py to Gappiness_v2.0.py

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Godwin Ani 2024-01-15 14:54:18 -05:00 committed by GitHub
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Utilities/for_MSAs/gappiness.py → Utilities/for_MSAs/Gappiness_v2.0.py
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@ -3,7 +3,7 @@
#Intent: To use the gappyness stats in filtering paralogs. #Intent: To use the gappyness stats in filtering paralogs.
#Inputs: A folder of alignment files #Inputs: A folder of alignment files
#Outputs: A spreadsheet of the gappyness stats #Outputs: A spreadsheet of the gappyness stats
#Example: python gappiness.py --alignment /Path/to/alignments --code ten digit code #Example: python Gappiness_v2.0.py --alignment /Path/to/alignments --code ten digit code
#Dependencies #Dependencies
import os, sys, re import os, sys, re