diff --git a/PTL1/Transcriptomes/Scripts/wrapper_submit.sh b/PTL1/Transcriptomes/Scripts/wrapper_submit.sh index 21941e4..b0ca607 100644 --- a/PTL1/Transcriptomes/Scripts/wrapper_submit.sh +++ b/PTL1/Transcriptomes/Scripts/wrapper_submit.sh @@ -6,28 +6,17 @@ ## needs and restrictions, followed by some example commands taken from the GitHub Wiki, more detail for which can be found ## here: https://github.com/Katzlab/EukPhylo/wiki/EukPhylo-Part-1:-GF-assignment - +############### FOR SMITH GRID HPC ############### ## Slurm specific code - #SBATCH --job-name=EukPhylo #SBATCH --output=EukPhylo.%j.out # Stdout (%j expands to jobId) #SBATCH --nodes=1 #SBATCH --ntasks=1 -#SBATCH --ntasks-per-node=1 # #change to number of srun when running multiple instances +#SBATCH --ntasks-per-node=1 ##change to number of srun when running multiple instances #SBATCH --mem=160G #SBATCH --mail-type=ALL #SBATCH --mail-user=email@xxx.edu ##add your email address for job updates - module purge #Cleans up any loaded modules -#Unity server -module use /gridapps/modules/all -module load conda/latest -conda activate hook_env -module load uri/main -module load diamond/2.1.7 -module load VSEARCH/2.22.1-GCC-11.3.0 - -#Grid server module load slurm module load tqdm/4.62.3-GCCcore-11.2.0 module load Biopython/1.79-foss-2021b @@ -35,6 +24,24 @@ module load BLAST+/2.12.0-gompi-2021b module load DIAMOND/2.0.13-GCC-11.2.0 module load VSEARCH/2.22.1-GCC-11.3.0 +############### FOR UMASS UNITY HPC ############### +## Slurm specific code +#SBATCH --job-name=EukPhylo +#SBATCH --output=EukPhylo.%j.out # Stdout (%j expands to jobId) +#SBATCH --nodes=1 +#SBATCH --ntasks=1 +#SBATCH --ntasks-per-node=64 +#SBATCH --mem=40G +#SBATCH --mail-type=ALL +#SBATCH --mail-user=email@xxx.edu +module purge #Cleans up any loaded modules +module use /gridapps/modules/all +module load conda/latest +conda activate hook_env +module load uri/main +module load diamond/2.1.7 +module load VSEARCH/2.22.1-GCC-11.3.0 + parent='/Your/Home/Folder/' ## Example commands