YuuMJ1997/EukPhylo
1
0
Fork 0
mirror of http://43.156.76.180:8026/YuuMJ/EukPhylo.git synced 2025-12-27 03:30:25 +08:00
Code Issues Packages Projects Releases Wiki Activity

Fixing _ vs dot yet again in trees.py

Browse Source
This commit is contained in:
Auden Cote-L'Heureux 2024-05-16 19:27:06 -04:00 committed by GitHub
parent d6b89c23d1
commit f4b29ca82d
No known key found for this signature in database
GPG Key ID: B5690EEEBB952194
1 changed files with 1 additions and 1 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
PTL2/Scripts/trees.py
View File

@ -43,7 +43,7 @@ def run(params):
os.mkdir(tax_iqtree_outdir)
#Run IQ-Tree
os.system('iqtree2 -s ' + guidance_path + '/' + file + ' -m LG+G -T 10 --prefix ' + tax_iqtree_outdir + '/' + file.split('.')[0].split('_preguidance')[0] + '_IQTree')
os.system('iqtree2 -s ' + guidance_path + '/' + file + ' -m LG+G -T 10 --prefix ' + tax_iqtree_outdir + '/' + file.split('.')[0].split('_preguidance')[0] + '.IQTree')
#Copy over the final output
if os.path.isfile(tax_iqtree_outdir + '/' + file.split('.')[0].split('_preguidance')[0] + '.IQTree.treefile'):