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Fixing _ vs dot yet again in trees.py

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Auden Cote-L'Heureux 2024-05-16 19:27:06 -04:00 committed by GitHub
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PTL2/Scripts/trees.py
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@ -43,7 +43,7 @@ def run(params):
os.mkdir(tax_iqtree_outdir) os.mkdir(tax_iqtree_outdir)
#Run IQ-Tree #Run IQ-Tree
os.system('iqtree2 -s ' + guidance_path + '/' + file + ' -m LG+G -T 10 --prefix ' + tax_iqtree_outdir + '/' + file.split('.')[0].split('_preguidance')[0] + '_IQTree') os.system('iqtree2 -s ' + guidance_path + '/' + file + ' -m LG+G -T 10 --prefix ' + tax_iqtree_outdir + '/' + file.split('.')[0].split('_preguidance')[0] + '.IQTree')
#Copy over the final output #Copy over the final output
if os.path.isfile(tax_iqtree_outdir + '/' + file.split('.')[0].split('_preguidance')[0] + '.IQTree.treefile'): if os.path.isfile(tax_iqtree_outdir + '/' + file.split('.')[0].split('_preguidance')[0] + '.IQTree.treefile'):