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Update CountTaxonOccurence_v2.0.py

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Godwin Ani 2024-02-05 13:53:22 -05:00 committed by GitHub
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Utilities/for_trees/CountTaxonOccurence_v2.0.py
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@ -5,7 +5,7 @@ Motivation: Count the number of occurences of each taxa in each OG in a post gui
Dependencies: Bio python, os, sys Dependencies: Bio python, os, sys
Inputs: Directory of postguidance files Inputs: Directory of postguidance files
Outputs: CSV file tallying all the counts of taxa in each OG file Outputs: CSV file tallying all the counts of taxa in each OG file
Command line: python count_tips.py --input <dir of postguidance files> Command line: python CountTaxonOccurence_v2.0.py --input <dir of postguidance files>
''' '''
import os import os