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Update and rename ProcessAndRenamePlateTranscripts_AKG.py to ProcessAndRenamePlateTranscripts.py

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Adri K. Grow 2025-01-15 11:25:16 -05:00 committed by GitHub
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Utilities/For_Assemblies/ProcessAndRenamePlateTranscripts_AKG.py → Utilities/For_Assemblies/ProcessAndRenamePlateTranscripts.py
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@ -8,7 +8,7 @@ Input:
Output: Output:
- a folder named 'renamed_transcripts' with 'transcripts.fasta' files now named by 10-digit codes; e.g. "Sr_rh_Ro04_assembledTranscripts.fasta" - a folder named 'renamed_transcripts' with 'transcripts.fasta' files now named by 10-digit codes; e.g. "Sr_rh_Ro04_assembledTranscripts.fasta"
Dependencies: python3 Dependencies: python3
Usage: python3 ProcessAndRenamePlateTranscripts_AKG.py <assembled transcriptomes directory> <mapping_file.txt> Usage: python3 ProcessAndRenamePlateTranscripts.py <assembled transcriptomes directory> <mapping_file.txt>
''' '''
import os import os