Auden Cote-L'Heureux
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1ee6f5ceb6
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Small changes, see description
- Default partial filter cov threshold is 20%
- Changed script names
- Made requirement of conspecific names file explicit when using XPC
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2023-10-02 11:49:03 -04:00 |
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Auden Cote-L'Heureux
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b2e381e01d
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Typo fix
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2023-10-02 11:12:44 -04:00 |
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Auden Cote-L'Heureux
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4b934b8de2
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Rename 4_InFrameStopCodonEsimator.py to 4_InFrameStopCodonEstimator.py
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2023-10-02 11:11:49 -04:00 |
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Auden Cote-L'Heureux
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fa294909c5
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Updates to script 6 filters & script names
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2023-09-29 13:20:49 -04:00 |
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Auden Cote-L'Heureux
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f9d747ce38
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Delete PTL1/Transcriptomes/Scripts/7_FinalizeName.py
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2023-09-29 13:20:17 -04:00 |
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Auden Cote-L'Heureux
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5f28d4447f
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Delete PTL1/Transcriptomes/Scripts/6b_update_cov_post_removepartials.py
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2023-09-29 13:20:11 -04:00 |
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Auden Cote-L'Heureux
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eb3db88688
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Delete PTL1/Transcriptomes/Scripts/6_FilterPartials.py
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2023-09-29 13:20:05 -04:00 |
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Auden Cote-L'Heureux
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02ec29d737
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Delete PTL1/Transcriptomes/Scripts/5_GCodeTranslate.py
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2023-09-29 13:19:55 -04:00 |
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Auden Cote-L'Heureux
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0b6823d007
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Delete PTL1/Transcriptomes/Scripts/4_InFrameStopFreq.py
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2023-09-29 13:19:49 -04:00 |
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Auden Cote-L'Heureux
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6746899daa
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Delete PTL1/Transcriptomes/Scripts/3_CountOGsDiamond.py
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2023-09-29 13:19:43 -04:00 |
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Auden Cote-L'Heureux
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18981a792f
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Delete PTL1/Transcriptomes/Scripts/2b_remove_Bact.py
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2023-09-29 13:19:36 -04:00 |
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Auden Cote-L'Heureux
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b6f439e7d6
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Delete PTL1/Transcriptomes/Scripts/2a_remove_rRNA.py
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2023-09-29 13:19:30 -04:00 |
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Auden Cote-L'Heureux
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3e01100304
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Delete PTL1/Transcriptomes/Scripts/1b_XSpeciesContaminationAgnes.py
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2023-09-29 13:19:23 -04:00 |
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Auden Cote-L'Heureux
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67bbdd30b8
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Delete PTL1/Transcriptomes/Scripts/1a_ContigFiltStats.py
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2023-09-29 13:19:12 -04:00 |
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Auden Cote-L'Heureux
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7d54bb7416
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New script 6 with revised length filtration
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2023-09-18 10:06:36 -04:00 |
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Auden Cote-L'Heureux
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8ccb6eb9a7
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Delete PTL1/Transcriptomes/Scripts/6_FilterPartials.py
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2023-09-18 10:05:39 -04:00 |
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Auden Cote-L'Heureux
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8a2010d510
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Delete PTL1/Transcriptomes/Output directory
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2023-09-13 14:17:32 -04:00 |
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Auden Cote-L'Heureux
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59f82e826c
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Small fix to 8_SummaryStats.py
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2023-08-21 13:25:04 -04:00 |
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Auden Cote-L'Heureux
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b1bd9873af
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Adding date to stats summary script outputs
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2023-08-21 13:10:37 -04:00 |
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Auden Cote-L'Heureux
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a24a546ade
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Fixing 4-fold family error in CUB.py
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2023-08-21 12:47:14 -04:00 |
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Auden Cote-L'Heureux
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b08135e9b4
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Removing matplotlib dependency from 8_SummaryStats.py
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2023-08-04 15:05:10 -04:00 |
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Auden Cote-L'Heureux
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020993b04f
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Delete scratch.py
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2023-06-15 09:24:50 -04:00 |
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Auden Cote-L'Heureux
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7800d18957
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Delete UnexpexctedShortStuffBlameXyrus.txt
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2023-06-15 09:24:40 -04:00 |
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Auden Cote-L'Heureux
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c386268442
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Delete PTL1.2831.out
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2023-06-15 09:24:31 -04:00 |
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Auden Cote-L'Heureux
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1a70cae152
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Add files via upload
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2023-06-15 09:16:54 -04:00 |
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Auden Cote-L'Heureux
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69844a6d66
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Add files via upload
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2023-06-13 14:01:17 -04:00 |
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Auden Cote-L'Heureux
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6dc90e0d4c
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Add files via upload
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2023-06-12 13:31:51 -04:00 |
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Auden Cote-L'Heureux
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f4b7839ea9
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Delete PTL1/Transcriptomes/Scripts directory
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2023-06-12 13:31:06 -04:00 |
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Auden Cote-L'Heureux
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7148d95109
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Delete .DS_Store
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2023-06-12 13:30:35 -04:00 |
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Katzlab
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d59c79b149
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PTL1
These are PTL1 scripts from ACL on Feb8. NOTE: These are WITHOUT databases..... these are at (Katzlab only) link here
https://drive.google.com/drive/folders/10n1GdTJqEOBg1nGA1hjxNHgaNZgmbwb5
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2023-02-14 11:30:14 -05:00 |
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