203 Commits

Author	SHA1	Message	Date
Auden Cote-L'Heureux	42ff780332	Fixing GC3-Degen calculation in CUB script	2023-08-15 15:35:10 -04:00
Auden Cote-L'Heureux	3ec4cbfd63	Delete CUB version with error (2.0)	2023-08-15 15:34:46 -04:00
Auden Cote-L'Heureux	366e91256b	Fixing line splitting bug in GuidanceWrapper_v2.1.py	2023-08-14 15:01:54 -04:00
Auden Cote-L'Heureux	943bc3461d	Adding allowance to backtranslating script for nucleotide sequences shorter than amino acid sequences by 3' trimming	2023-08-10 10:40:19 -04:00
Auden Cote-L'Heureux	29daa4932b	Small update to backtranslating script to account for sequence mismatch	2023-08-10 10:33:34 -04:00
Auden Cote-L'Heureux	6324cabb71	Adding first version of backtranslating script	2023-08-10 10:24:50 -04:00
Auden Cote-L'Heureux	7223b4ee60	Updating tree coloring script to fix rerooting issue and ease input customization	2023-08-01 14:54:09 -04:00
Auden Cote-L'Heureux	1457cd604a	Updating clade grabber to fix rerooting error	2023-08-01 14:27:49 -04:00
Auden Cote-L'Heureux	7ba0b238ca	Delete CladeGrabbing_v2.0.py	2023-08-01 14:26:40 -04:00
Auden Cote-L'Heureux	bc72d5fca0	Delete .DS_Store	2023-08-01 14:23:49 -04:00
Auden Cote-L'Heureux	9569fec1ed	Updating sisters script to fix rerooting error	2023-08-01 14:23:33 -04:00
Auden Cote-L'Heureux	b947f9c367	Delete ContaminationBySisters_v2.1.py	2023-08-01 14:22:37 -04:00
Auden Cote-L'Heureux	dc85112b98	Fixing codon model option in Guidance wrapper	2023-07-21 14:39:22 -04:00
Auden Cote-L'Heureux	7e2a3b18a7	Rename GuidanceWrapper_v2.0.py to GuidanceWrapper_v2.1.py	2023-07-20 14:50:56 -04:00
Auden Cote-L'Heureux	696a76c39d	Adding codon model option to Guidance wrapper	2023-07-20 14:50:34 -04:00
Auden Cote-L'Heureux	a686bdb360	Adding new version composition script CUB_v2.0.py	2023-07-20 10:02:18 -04:00
Auden Cote-L'Heureux	a14fe19ee0	Delete CUB.py	2023-07-20 10:01:45 -04:00
Auden Cote-L'Heureux	d8f1db18fa	Uploading new Guidance wrapper	2023-07-17 16:59:43 -04:00
Auden Cote-L'Heureux	2cc6767f95	Delete the old Guidance wrapper	2023-07-17 16:59:31 -04:00
rebeccagawron	480cf3b9d6	Fix small bug in ContaminationBySisters_v2.1.py	2023-07-05 13:29:32 -04:00
Auden Cote-L'Heureux	5a3ee58177	Add files via upload	2023-07-05 10:36:12 -04:00
Auden Cote-L'Heureux	5624e236d5	Delete ContaminationBySisters_v2.0.py	2023-07-05 10:36:01 -04:00
ElinorSterner	207fd815ed	Update README.md	2023-06-14 16:00:32 -04:00
ElinorSterner	4e0d8a63ea	Add files via upload	2023-06-14 15:55:17 -04:00
Auden Cote-L'Heureux	165a95fa9d	Add files via upload	2023-06-12 13:37:47 -04:00
Auden Cote-L'Heureux	b2079b725d	Add files via upload	2023-06-12 13:35:58 -04:00
Auden Cote-L'Heureux	1a0d8ea54d	Add files via upload	2023-06-12 13:34:42 -04:00
ElinorSterner	9582f9d1e6	Update assess_transcriptomes.py	2023-06-09 11:42:49 -04:00
ElinorSterner	e907e048ff	Update README.md	2023-06-08 17:20:11 -04:00
ElinorSterner	a86a7d7610	Update assess_transcriptomes.py ... Changed arguments and removed renaming	2023-06-08 17:17:12 -04:00
Auden Cote-L'Heureux	0a6f22b989	Annotating PlotComps.R	2023-05-05 10:41:20 -04:00
Auden Cote-L'Heureux	17634fbfe0	Added composition script to utilities	2023-05-05 10:40:04 -04:00
ElinorSterner	3a04093eb6	Update README.md	2023-04-24 13:37:18 -04:00
ElinorSterner	1d7f73f6c1	Update assess_transcriptomes.py	2023-04-24 13:36:12 -04:00
ElinorSterner	9d42351d52	Update README.md	2023-04-09 13:13:48 -04:00
ElinorSterner	d0fb1cb352	Update README.md	2023-04-07 16:04:43 -04:00
ElinorSterner	88155175f7	Add files via upload	2023-04-07 15:45:43 -04:00
ElinorSterner	d685f5ecec	Update README.md	2023-04-07 15:44:24 -04:00
ElinorSterner	45df9546c9	Update README.md	2023-04-05 16:01:05 -04:00
ElinorSterner	8d42d49c48	Update assess_transcriptomes.py	2023-04-05 15:53:14 -04:00
ElinorSterner	3a2e7476e2	Add files via upload	2023-04-03 16:18:33 -04:00
ElinorSterner	55e1f71854	Create assess_transcriptomes.py	2023-04-03 16:17:48 -04:00
ElinorSterner	2d66ff52d3	Add files via upload	2023-03-21 15:05:09 -04:00
Adri K. Grow	182615bf75	Add files via upload	2023-03-09 15:47:24 -05:00
MCLeleu	33b4462bc2	Add files via upload	2023-03-03 16:55:53 -05:00
Katzlab	dd76ab1d12	Added PTL2 Scripts ... These are PTL2 files from Auden 2/9	2023-02-14 11:20:52 -05:00
Godwin Ani	fe347c9e04	Update README.md	2023-02-09 21:52:17 +01:00
Godwin Ani	9f86dbe040	SeqLengthToCsv ... Seq_length_to_csv is a program that exports the length of DNA sequences excluding gaps and missing data to a csv file.	2023-02-09 18:41:01 +01:00
Godwin Ani	341c9a487b	ClusterMC ... A clustering program that accepts and validates users input.	2023-02-09 18:36:34 +01:00
Godwin Ani	b30e05bd45	Create README.md	2023-02-09 17:57:15 +01:00