20 Commits

Author	SHA1	Message	Date
Auden Cote-L'Heureux	43a7439a02	Adjusting sim filter, adding score to guidance removed seqs output	2023-11-03 11:05:46 -04:00
Auden Cote-L'Heureux	e90e177276	Fixing small oversight in concatenate.py	2023-10-30 13:00:07 -04:00
Auden Cote-L'Heureux	6f1c37bcbc	Updating utils.py to account for addition of concatenation	2023-10-30 12:49:43 -04:00
Auden Cote-L'Heureux	2868b53dfc	Adding concatenation script	2023-10-30 12:49:12 -04:00
Auden Cote-L'Heureux	2280edaf5a	Fixed variable reference error in preguidance.py	2023-10-21 20:09:27 -04:00
Auden Cote-L'Heureux	156e4ee8d0	Removed overlap/dissimilarity filter ... (Deleted previous version because of technical GitHub issues)	2023-10-19 12:49:35 -04:00
Auden Cote-L'Heureux	f5140c487b	Delete PTL2/Scripts/preguidance.py	2023-10-19 12:48:40 -04:00
Auden Cote-L'Heureux	7169e3666a	Added OF log to preguidance	2023-10-15 17:37:43 -04:00
Auden Cote-L'Heureux	356fc287f0	Delete PTL2/Scripts/preguidance.py	2023-10-15 17:37:31 -04:00
Auden Cote-L'Heureux	7a438d250a	Small print change in preguidance.py	2023-10-15 17:25:58 -04:00
Auden Cote-L'Heureux	7b3860a449	Update utils.py	2023-10-13 10:09:16 -04:00
Auden Cote-L'Heureux	032233968d	Reverting to version of trees.py from before contamination loop work	2023-09-18 12:58:48 -04:00
Auden Cote-L'Heureux	fe813b678d	Delete PTL2/Scripts/trees.py	2023-09-18 12:58:25 -04:00
Godwin Ani	a7832842ae	Fixed Tree script by Auden ... Accepts both .fas and .fasta files now.	2023-08-31 13:05:16 -04:00
Godwin Ani	7af603d7f4	Delete PTL2/Scripts/trees.py ... Script with .fas and .fasta issue.	2023-08-31 13:04:18 -04:00
Adri K. Grow	5d98dea9ff	Delete run_phylotol.sh	2023-08-30 09:31:58 -04:00
Adri K. Grow	c1d8ea93fc	Add files via upload	2023-08-30 09:29:33 -04:00
Auden Cote-L'Heureux	a57736a32c	Add files via upload	2023-07-18 13:06:24 -04:00
Auden Cote-L'Heureux	cfd582f6ee	Minor changes to PTL2	2023-07-06 15:50:16 -04:00
Auden Cote-L'Heureux	f77ece5a2a	Add files via upload	2023-06-12 13:25:29 -04:00