223 Commits

Author	SHA1	Message	Date
Auden Cote-L'Heureux	25b41672b3	Updating default colors in ColorByClade_v2.1.py	2023-12-18 11:21:49 -05:00
Auden Cote-L'Heureux	110e3b7479	Fixing minor error in clade sizes script	2023-12-06 20:11:53 -05:00
Auden Cote-L'Heureux	9cf716d431	Added clade-size (()()()) script	2023-12-01 12:15:21 -05:00
Godwin Ani	31fa46a149	Rename seqs by gc3 width	2023-11-27 15:42:16 -05:00
Auden Cote-L'Heureux	4e1ceae627	Delete Utilities/for_trees/ColorByClade_v2.0.py	2023-11-27 13:54:09 -05:00
Auden Cote-L'Heureux	3dd53c1eb9	Fixing rooting & ladderizing & node labels	2023-11-27 13:53:02 -05:00
MCLeleu	e082b6bf3a	Rename rename_tip_labels .py to rename_tip_labels.py ... Removed a space in the filename	2023-11-15 16:41:31 +01:00
Godwin Ani	f292cf3cf9	Add files via upload	2023-11-13 16:25:52 -05:00
Godwin Ani	c300980148	f/paralogs assessment script	2023-11-07 11:44:36 -05:00
Godwin Ani	b8436d03dd	For adding metadata to tree tip labels	2023-11-06 10:15:53 -05:00
Auden Cote-L'Heureux	4c4997ecff	Update CountTaxonOccurence.py	2023-10-24 11:20:52 -04:00
Auden Cote-L'Heureux	b3fcdc7c3c	Update CountTaxonOccurence.py	2023-10-24 11:20:11 -04:00
Auden Cote-L'Heureux	81f54d2e1c	Update and rename CountTreeTips.py to CountTaxonOccurence.py	2023-10-24 11:19:50 -04:00
Auden Cote-L'Heureux	9edbf3b87c	Small fix CountTreeTips.py	2023-10-24 11:16:11 -04:00
Auden Cote-L'Heureux	8ae3f7ca57	Rename count_tips.py to CountTreeTips.py	2023-10-24 11:15:49 -04:00
Auden Cote-L'Heureux	9d07bca28c	Updating arg parsing in tip counting script	2023-10-24 11:15:37 -04:00
Adri K. Grow	6a0b0ace3a	Add files via upload	2023-09-26 12:49:36 -04:00
Adri K. Grow	e502d2638f	Add files via upload	2023-09-01 14:35:08 -04:00
Godwin Ani	a60fb89a45	output folder error solved	2023-08-24 14:46:32 -04:00
Auden Cote-L'Heureux	13af646e65	Small fix to ColorByClade_v2.0.py	2023-08-22 10:00:11 -04:00
Auden Cote-L'Heureux	42ff780332	Fixing GC3-Degen calculation in CUB script	2023-08-15 15:35:10 -04:00
Auden Cote-L'Heureux	3ec4cbfd63	Delete CUB version with error (2.0)	2023-08-15 15:34:46 -04:00
Auden Cote-L'Heureux	366e91256b	Fixing line splitting bug in GuidanceWrapper_v2.1.py	2023-08-14 15:01:54 -04:00
Auden Cote-L'Heureux	943bc3461d	Adding allowance to backtranslating script for nucleotide sequences shorter than amino acid sequences by 3' trimming	2023-08-10 10:40:19 -04:00
Auden Cote-L'Heureux	29daa4932b	Small update to backtranslating script to account for sequence mismatch	2023-08-10 10:33:34 -04:00
Auden Cote-L'Heureux	6324cabb71	Adding first version of backtranslating script	2023-08-10 10:24:50 -04:00
Auden Cote-L'Heureux	7223b4ee60	Updating tree coloring script to fix rerooting issue and ease input customization	2023-08-01 14:54:09 -04:00
Auden Cote-L'Heureux	1457cd604a	Updating clade grabber to fix rerooting error	2023-08-01 14:27:49 -04:00
Auden Cote-L'Heureux	7ba0b238ca	Delete CladeGrabbing_v2.0.py	2023-08-01 14:26:40 -04:00
Auden Cote-L'Heureux	bc72d5fca0	Delete .DS_Store	2023-08-01 14:23:49 -04:00
Auden Cote-L'Heureux	9569fec1ed	Updating sisters script to fix rerooting error	2023-08-01 14:23:33 -04:00
Auden Cote-L'Heureux	b947f9c367	Delete ContaminationBySisters_v2.1.py	2023-08-01 14:22:37 -04:00
Auden Cote-L'Heureux	dc85112b98	Fixing codon model option in Guidance wrapper	2023-07-21 14:39:22 -04:00
Auden Cote-L'Heureux	7e2a3b18a7	Rename GuidanceWrapper_v2.0.py to GuidanceWrapper_v2.1.py	2023-07-20 14:50:56 -04:00
Auden Cote-L'Heureux	696a76c39d	Adding codon model option to Guidance wrapper	2023-07-20 14:50:34 -04:00
Auden Cote-L'Heureux	a686bdb360	Adding new version composition script CUB_v2.0.py	2023-07-20 10:02:18 -04:00
Auden Cote-L'Heureux	a14fe19ee0	Delete CUB.py	2023-07-20 10:01:45 -04:00
Auden Cote-L'Heureux	d8f1db18fa	Uploading new Guidance wrapper	2023-07-17 16:59:43 -04:00
Auden Cote-L'Heureux	2cc6767f95	Delete the old Guidance wrapper	2023-07-17 16:59:31 -04:00
rebeccagawron	480cf3b9d6	Fix small bug in ContaminationBySisters_v2.1.py	2023-07-05 13:29:32 -04:00
Auden Cote-L'Heureux	5a3ee58177	Add files via upload	2023-07-05 10:36:12 -04:00
Auden Cote-L'Heureux	5624e236d5	Delete ContaminationBySisters_v2.0.py	2023-07-05 10:36:01 -04:00
ElinorSterner	207fd815ed	Update README.md	2023-06-14 16:00:32 -04:00
ElinorSterner	4e0d8a63ea	Add files via upload	2023-06-14 15:55:17 -04:00
Auden Cote-L'Heureux	165a95fa9d	Add files via upload	2023-06-12 13:37:47 -04:00
Auden Cote-L'Heureux	b2079b725d	Add files via upload	2023-06-12 13:35:58 -04:00
Auden Cote-L'Heureux	1a0d8ea54d	Add files via upload	2023-06-12 13:34:42 -04:00
ElinorSterner	9582f9d1e6	Update assess_transcriptomes.py	2023-06-09 11:42:49 -04:00
ElinorSterner	e907e048ff	Update README.md	2023-06-08 17:20:11 -04:00
ElinorSterner	a86a7d7610	Update assess_transcriptomes.py ... Changed arguments and removed renaming	2023-06-08 17:17:12 -04:00