143 Commits

Author	SHA1	Message	Date
Auden Cote-L'Heureux	0b6823d007	Delete PTL1/Transcriptomes/Scripts/4_InFrameStopFreq.py	2023-09-29 13:19:49 -04:00
Auden Cote-L'Heureux	6746899daa	Delete PTL1/Transcriptomes/Scripts/3_CountOGsDiamond.py	2023-09-29 13:19:43 -04:00
Auden Cote-L'Heureux	18981a792f	Delete PTL1/Transcriptomes/Scripts/2b_remove_Bact.py	2023-09-29 13:19:36 -04:00
Auden Cote-L'Heureux	b6f439e7d6	Delete PTL1/Transcriptomes/Scripts/2a_remove_rRNA.py	2023-09-29 13:19:30 -04:00
Auden Cote-L'Heureux	3e01100304	Delete PTL1/Transcriptomes/Scripts/1b_XSpeciesContaminationAgnes.py	2023-09-29 13:19:23 -04:00
Auden Cote-L'Heureux	67bbdd30b8	Delete PTL1/Transcriptomes/Scripts/1a_ContigFiltStats.py	2023-09-29 13:19:12 -04:00
Auden Cote-L'Heureux	7d54bb7416	New script 6 with revised length filtration	2023-09-18 10:06:36 -04:00
Auden Cote-L'Heureux	8ccb6eb9a7	Delete PTL1/Transcriptomes/Scripts/6_FilterPartials.py	2023-09-18 10:05:39 -04:00
Auden Cote-L'Heureux	106b2e2d89	Added annotation to 4_CountOGsDiamond.py	2023-09-18 10:04:25 -04:00
Auden Cote-L'Heureux	8e561dc735	New Script 6 with fixed ciliate genetic code issue	2023-09-18 10:02:48 -04:00
Auden Cote-L'Heureux	d300ade1b0	Delete PTL1/Genomes/Scripts/6_SummaryStats.py	2023-09-18 10:02:35 -04:00
Auden Cote-L'Heureux	3015aaa2eb	New Script 4 with added Hook-relative length filter	2023-09-18 10:02:06 -04:00
Auden Cote-L'Heureux	a45f921955	Delete PTL1/Genomes/Scripts/4_CountOGsDiamond.py	2023-09-18 10:01:44 -04:00
Auden Cote-L'Heureux	bceb9ff1de	Delete PTL1/Genomes/Output directory	2023-09-13 14:17:43 -04:00
Auden Cote-L'Heureux	8a2010d510	Delete PTL1/Transcriptomes/Output directory	2023-09-13 14:17:32 -04:00
Auden Cote-L'Heureux	59f82e826c	Small fix to 8_SummaryStats.py	2023-08-21 13:25:04 -04:00
Auden Cote-L'Heureux	2f334642d3	Small fix to 6_SummaryStats.py	2023-08-21 13:24:42 -04:00
Auden Cote-L'Heureux	d4d1614e61	Small fix to 6_SummaryStats.py	2023-08-21 13:11:04 -04:00
Auden Cote-L'Heureux	b1bd9873af	Adding date to stats summary script outputs	2023-08-21 13:10:37 -04:00
Auden Cote-L'Heureux	37c1c36c7a	Adding date to stat summary script	2023-08-21 13:07:07 -04:00
Auden Cote-L'Heureux	f253022151	Fixing 4-fold family error in CUB.py	2023-08-21 12:47:45 -04:00
Auden Cote-L'Heureux	a24a546ade	Fixing 4-fold family error in CUB.py	2023-08-21 12:47:14 -04:00
Auden Cote-L'Heureux	b08135e9b4	Removing matplotlib dependency from 8_SummaryStats.py	2023-08-04 15:05:10 -04:00
Auden Cote-L'Heureux	ab65eb7851	Removing matplotlib requirement from 6_SummaryStats.py	2023-08-04 14:29:50 -04:00
Auden Cote-L'Heureux	020993b04f	Delete scratch.py	2023-06-15 09:24:50 -04:00
Auden Cote-L'Heureux	7800d18957	Delete UnexpexctedShortStuffBlameXyrus.txt	2023-06-15 09:24:40 -04:00
Auden Cote-L'Heureux	c386268442	Delete PTL1.2831.out	2023-06-15 09:24:31 -04:00
Auden Cote-L'Heureux	1a70cae152	Add files via upload	2023-06-15 09:16:54 -04:00
Auden Cote-L'Heureux	09b2599f3e	Add files via upload	2023-06-13 15:06:00 -04:00
Auden Cote-L'Heureux	69844a6d66	Add files via upload	2023-06-13 14:01:17 -04:00
Auden Cote-L'Heureux	7da3de77e4	Add files via upload	2023-06-13 14:00:56 -04:00
Auden Cote-L'Heureux	6dc90e0d4c	Add files via upload	2023-06-12 13:31:51 -04:00
Auden Cote-L'Heureux	f4b7839ea9	Delete PTL1/Transcriptomes/Scripts directory	2023-06-12 13:31:06 -04:00
Auden Cote-L'Heureux	540af11c9a	Delete .DS_Store	2023-06-12 13:30:54 -04:00
Auden Cote-L'Heureux	a55eb0c7f0	Delete .DS_Store	2023-06-12 13:30:45 -04:00
Auden Cote-L'Heureux	7148d95109	Delete .DS_Store	2023-06-12 13:30:35 -04:00
Auden Cote-L'Heureux	cc83374ce4	Add files via upload	2023-06-12 13:30:20 -04:00
Auden Cote-L'Heureux	3347fc979a	Delete PTL1/Genomes/Scripts directory	2023-06-12 13:30:05 -04:00
Auden Cote-L'Heureux	58294fa143	Delete .DS_Store	2023-06-12 13:19:24 -04:00
Katzlab	d59c79b149	PTL1 ... These are PTL1 scripts from ACL on Feb8. NOTE: These are WITHOUT databases..... these are at (Katzlab only) link here https://drive.google.com/drive/folders/10n1GdTJqEOBg1nGA1hjxNHgaNZgmbwb5	2023-02-14 11:30:14 -05:00
Godwin Ani	9ef144008a	Update README.md	2023-02-09 21:46:43 +01:00
Godwin Ani	621517812a	Update README.md	2023-02-09 21:41:35 +01:00
Godwin Ani	0bd20fa365	Create README.md	2023-02-09 17:47:19 +01:00