15 Commits

Author	SHA1	Message	Date
Auden Cote-L'Heureux	676a11a287	updating header in preguidance.py	2025-01-19 11:07:49 -05:00
Auden Cote-L'Heureux	80409a22ff	annotating preguidance.py	2024-02-07 12:04:30 -05:00
Auden Cote-L'Heureux	ccb70d9b46	More flexible OG identifier handling in preguidance.py	2024-01-12 13:25:53 -05:00
Godwin Ani	b466a30a96	Updated preguidance with no logger dependency	2023-12-04 14:54:57 -05:00
Godwin Ani	22bd67d2fa	OG6/G/A, Sim_filter by taxa, and Sim_removed_seqs	2023-11-27 15:15:50 -05:00
Auden Cote-L'Heureux	8872d1724d	Update preguidance.py	2023-11-24 12:35:21 -05:00
Auden Cote-L'Heureux	1b587bf266	Version of scripts used to successfully run conserved OGs on 11/13/23 ... Recent updates: Similarity filter adjusted to have on/off parameter Blacklist implemented & tested Output list of Guidance-removed sequences with seq scores Temp/intermediate file naming issue fixed	2023-11-13 12:09:57 -05:00
Auden Cote-L'Heureux	43a7439a02	Adjusting sim filter, adding score to guidance removed seqs output	2023-11-03 11:05:46 -04:00
Auden Cote-L'Heureux	2280edaf5a	Fixed variable reference error in preguidance.py	2023-10-21 20:09:27 -04:00
Auden Cote-L'Heureux	156e4ee8d0	Removed overlap/dissimilarity filter ... (Deleted previous version because of technical GitHub issues)	2023-10-19 12:49:35 -04:00
Auden Cote-L'Heureux	f5140c487b	Delete PTL2/Scripts/preguidance.py	2023-10-19 12:48:40 -04:00
Auden Cote-L'Heureux	7169e3666a	Added OF log to preguidance	2023-10-15 17:37:43 -04:00
Auden Cote-L'Heureux	356fc287f0	Delete PTL2/Scripts/preguidance.py	2023-10-15 17:37:31 -04:00
Auden Cote-L'Heureux	7a438d250a	Small print change in preguidance.py	2023-10-15 17:25:58 -04:00
Auden Cote-L'Heureux	f77ece5a2a	Add files via upload	2023-06-12 13:25:29 -04:00