29 Commits

Author	SHA1	Message	Date
Auden Cote-L'Heureux	b2e381e01d	Typo fix	2023-10-02 11:12:44 -04:00
Auden Cote-L'Heureux	4b934b8de2	Rename 4_InFrameStopCodonEsimator.py to 4_InFrameStopCodonEstimator.py	2023-10-02 11:11:49 -04:00
Auden Cote-L'Heureux	fa294909c5	Updates to script 6 filters & script names	2023-09-29 13:20:49 -04:00
Auden Cote-L'Heureux	f9d747ce38	Delete PTL1/Transcriptomes/Scripts/7_FinalizeName.py	2023-09-29 13:20:17 -04:00
Auden Cote-L'Heureux	5f28d4447f	Delete PTL1/Transcriptomes/Scripts/6b_update_cov_post_removepartials.py	2023-09-29 13:20:11 -04:00
Auden Cote-L'Heureux	eb3db88688	Delete PTL1/Transcriptomes/Scripts/6_FilterPartials.py	2023-09-29 13:20:05 -04:00
Auden Cote-L'Heureux	02ec29d737	Delete PTL1/Transcriptomes/Scripts/5_GCodeTranslate.py	2023-09-29 13:19:55 -04:00
Auden Cote-L'Heureux	0b6823d007	Delete PTL1/Transcriptomes/Scripts/4_InFrameStopFreq.py	2023-09-29 13:19:49 -04:00
Auden Cote-L'Heureux	6746899daa	Delete PTL1/Transcriptomes/Scripts/3_CountOGsDiamond.py	2023-09-29 13:19:43 -04:00
Auden Cote-L'Heureux	18981a792f	Delete PTL1/Transcriptomes/Scripts/2b_remove_Bact.py	2023-09-29 13:19:36 -04:00
Auden Cote-L'Heureux	b6f439e7d6	Delete PTL1/Transcriptomes/Scripts/2a_remove_rRNA.py	2023-09-29 13:19:30 -04:00
Auden Cote-L'Heureux	3e01100304	Delete PTL1/Transcriptomes/Scripts/1b_XSpeciesContaminationAgnes.py	2023-09-29 13:19:23 -04:00
Auden Cote-L'Heureux	67bbdd30b8	Delete PTL1/Transcriptomes/Scripts/1a_ContigFiltStats.py	2023-09-29 13:19:12 -04:00
Auden Cote-L'Heureux	7d54bb7416	New script 6 with revised length filtration	2023-09-18 10:06:36 -04:00
Auden Cote-L'Heureux	8ccb6eb9a7	Delete PTL1/Transcriptomes/Scripts/6_FilterPartials.py	2023-09-18 10:05:39 -04:00
Auden Cote-L'Heureux	8a2010d510	Delete PTL1/Transcriptomes/Output directory	2023-09-13 14:17:32 -04:00
Auden Cote-L'Heureux	59f82e826c	Small fix to 8_SummaryStats.py	2023-08-21 13:25:04 -04:00
Auden Cote-L'Heureux	b1bd9873af	Adding date to stats summary script outputs	2023-08-21 13:10:37 -04:00
Auden Cote-L'Heureux	a24a546ade	Fixing 4-fold family error in CUB.py	2023-08-21 12:47:14 -04:00
Auden Cote-L'Heureux	b08135e9b4	Removing matplotlib dependency from 8_SummaryStats.py	2023-08-04 15:05:10 -04:00
Auden Cote-L'Heureux	020993b04f	Delete scratch.py	2023-06-15 09:24:50 -04:00
Auden Cote-L'Heureux	7800d18957	Delete UnexpexctedShortStuffBlameXyrus.txt	2023-06-15 09:24:40 -04:00
Auden Cote-L'Heureux	c386268442	Delete PTL1.2831.out	2023-06-15 09:24:31 -04:00
Auden Cote-L'Heureux	1a70cae152	Add files via upload	2023-06-15 09:16:54 -04:00
Auden Cote-L'Heureux	69844a6d66	Add files via upload	2023-06-13 14:01:17 -04:00
Auden Cote-L'Heureux	6dc90e0d4c	Add files via upload	2023-06-12 13:31:51 -04:00
Auden Cote-L'Heureux	f4b7839ea9	Delete PTL1/Transcriptomes/Scripts directory	2023-06-12 13:31:06 -04:00
Auden Cote-L'Heureux	7148d95109	Delete .DS_Store	2023-06-12 13:30:35 -04:00
Katzlab	d59c79b149	PTL1 ... These are PTL1 scripts from ACL on Feb8. NOTE: These are WITHOUT databases..... these are at (Katzlab only) link here https://drive.google.com/drive/folders/10n1GdTJqEOBg1nGA1hjxNHgaNZgmbwb5	2023-02-14 11:30:14 -05:00