29 Commits

Author	SHA1	Message	Date
Godwin N. Ani	dedc315f24	Update guidance.py	2025-03-25 12:16:55 -04:00
Godwin N. Ani	95d4b0771e	Update guidance.py	2025-03-25 10:42:23 -04:00
Godwin Ani	fe79fc37e5	Update trimal for docker	2025-03-11 13:46:09 -04:00
Godwin Ani	0632b1a14f	Add files via upload	2025-03-11 13:23:29 -04:00
Godwin Ani	0a04332784	Delete PTL2/Scripts/guidance.py	2025-03-11 13:23:07 -04:00
Godwin Ani	125440bc65	Add files via upload	2025-03-11 10:11:32 -04:00
Godwin Ani	bad741283f	Delete PTL2/Scripts/guidance.py	2025-03-11 10:11:21 -04:00
Godwin Ani	f84fdd3355	Update guidance.py	2025-03-10 16:55:03 -04:00
Godwin Ani	0100ca628f	Add files via upload	2025-03-05 16:22:54 -05:00
Godwin Ani	d5dbc9038d	Delete PTL2/Scripts/guidance.py	2025-03-05 16:22:34 -05:00
Godwin Ani	7b03c52d21	Update guidance.py	2025-03-04 13:37:16 -05:00
Godwin Ani	ed3d53c108	Update guidance.py	2025-03-04 13:26:34 -05:00
Godwin Ani	4d3ca8309c	Add files via upload	2025-03-04 13:16:00 -05:00
Godwin Ani	d935a6922a	Delete PTL2/Scripts/guidance.py	2025-03-04 13:15:33 -05:00
Godwin Ani	25690a6ccb	Update guidance.py	2025-03-04 12:49:36 -05:00
Adri K. Grow	030401e9b0	Update guidance.py	2025-02-14 13:57:57 -05:00
Auden Cote-L'Heureux	0df7470b92	updating header in guidance.py	2025-01-19 11:07:25 -05:00
Auden Cote-L'Heureux	31a9295485	Adding flag for large files to guidance.py	2025-01-09 12:19:51 -05:00
Auden Cote-L'Heureux	c0dfdb6248	Adding trimal cutoff as parameter	2025-01-09 12:11:10 -05:00
Godwin Ani	2f67243515	Add files via upload	2024-04-11 14:43:53 -04:00
Godwin Ani	21e54ab7e4	Reverting to previous version	2024-04-01 11:04:37 -04:00
Godwin Ani	80ad29e6d5	Adding keep_iter parameter	2024-03-22 15:05:54 -04:00
Auden Cote-L'Heureux	7220b81402	annotating guidance.py	2024-02-07 12:18:46 -05:00
Auden Cote-L'Heureux	0f2ae76d13	exiting after errors in guidance.py	2024-02-07 11:30:26 -05:00
Auden Cote-L'Heureux	556b8646ba	removing calls to logger in guidance.py	2024-02-07 11:28:07 -05:00
Auden Cote-L'Heureux	1b587bf266	Version of scripts used to successfully run conserved OGs on 11/13/23 ... Recent updates: Similarity filter adjusted to have on/off parameter Blacklist implemented & tested Output list of Guidance-removed sequences with seq scores Temp/intermediate file naming issue fixed	2023-11-13 12:09:57 -05:00
Auden Cote-L'Heureux	43a7439a02	Adjusting sim filter, adding score to guidance removed seqs output	2023-11-03 11:05:46 -04:00
Auden Cote-L'Heureux	cfd582f6ee	Minor changes to PTL2	2023-07-06 15:50:16 -04:00
Auden Cote-L'Heureux	f77ece5a2a	Add files via upload	2023-06-12 13:25:29 -04:00