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Author	SHA1	Message	Date
Auden Cote-L'Heureux	8e561dc735	New Script 6 with fixed ciliate genetic code issue	2023-09-18 10:02:48 -04:00
Auden Cote-L'Heureux	d300ade1b0	Delete PTL1/Genomes/Scripts/6_SummaryStats.py	2023-09-18 10:02:35 -04:00
Auden Cote-L'Heureux	3015aaa2eb	New Script 4 with added Hook-relative length filter	2023-09-18 10:02:06 -04:00
Auden Cote-L'Heureux	a45f921955	Delete PTL1/Genomes/Scripts/4_CountOGsDiamond.py	2023-09-18 10:01:44 -04:00
Auden Cote-L'Heureux	bceb9ff1de	Delete PTL1/Genomes/Output directory	2023-09-13 14:17:43 -04:00
Auden Cote-L'Heureux	8a2010d510	Delete PTL1/Transcriptomes/Output directory	2023-09-13 14:17:32 -04:00
Adri K. Grow	e502d2638f	Add files via upload	2023-09-01 14:35:08 -04:00
Godwin Ani	a7832842ae	Fixed Tree script by Auden ... Accepts both .fas and .fasta files now.	2023-08-31 13:05:16 -04:00
Godwin Ani	7af603d7f4	Delete PTL2/Scripts/trees.py ... Script with .fas and .fasta issue.	2023-08-31 13:04:18 -04:00
Adri K. Grow	c1b955d9b2	Add files via upload	2023-08-30 09:32:26 -04:00
Adri K. Grow	5d98dea9ff	Delete run_phylotol.sh	2023-08-30 09:31:58 -04:00
Adri K. Grow	c1d8ea93fc	Add files via upload	2023-08-30 09:29:33 -04:00
Godwin Ani	a60fb89a45	output folder error solved	2023-08-24 14:46:32 -04:00
Auden Cote-L'Heureux	13af646e65	Small fix to ColorByClade_v2.0.py	2023-08-22 10:00:11 -04:00
Auden Cote-L'Heureux	59f82e826c	Small fix to 8_SummaryStats.py	2023-08-21 13:25:04 -04:00
Auden Cote-L'Heureux	2f334642d3	Small fix to 6_SummaryStats.py	2023-08-21 13:24:42 -04:00
Auden Cote-L'Heureux	d4d1614e61	Small fix to 6_SummaryStats.py	2023-08-21 13:11:04 -04:00
Auden Cote-L'Heureux	b1bd9873af	Adding date to stats summary script outputs	2023-08-21 13:10:37 -04:00
Auden Cote-L'Heureux	37c1c36c7a	Adding date to stat summary script	2023-08-21 13:07:07 -04:00
Auden Cote-L'Heureux	f253022151	Fixing 4-fold family error in CUB.py	2023-08-21 12:47:45 -04:00
Auden Cote-L'Heureux	a24a546ade	Fixing 4-fold family error in CUB.py	2023-08-21 12:47:14 -04:00
Auden Cote-L'Heureux	42ff780332	Fixing GC3-Degen calculation in CUB script	2023-08-15 15:35:10 -04:00
Auden Cote-L'Heureux	3ec4cbfd63	Delete CUB version with error (2.0)	2023-08-15 15:34:46 -04:00
Auden Cote-L'Heureux	366e91256b	Fixing line splitting bug in GuidanceWrapper_v2.1.py	2023-08-14 15:01:54 -04:00
Auden Cote-L'Heureux	943bc3461d	Adding allowance to backtranslating script for nucleotide sequences shorter than amino acid sequences by 3' trimming	2023-08-10 10:40:19 -04:00
Auden Cote-L'Heureux	29daa4932b	Small update to backtranslating script to account for sequence mismatch	2023-08-10 10:33:34 -04:00
Auden Cote-L'Heureux	6324cabb71	Adding first version of backtranslating script	2023-08-10 10:24:50 -04:00
Auden Cote-L'Heureux	b08135e9b4	Removing matplotlib dependency from 8_SummaryStats.py	2023-08-04 15:05:10 -04:00
Auden Cote-L'Heureux	ab65eb7851	Removing matplotlib requirement from 6_SummaryStats.py	2023-08-04 14:29:50 -04:00
Auden Cote-L'Heureux	7223b4ee60	Updating tree coloring script to fix rerooting issue and ease input customization	2023-08-01 14:54:09 -04:00
Auden Cote-L'Heureux	1457cd604a	Updating clade grabber to fix rerooting error	2023-08-01 14:27:49 -04:00
Auden Cote-L'Heureux	7ba0b238ca	Delete CladeGrabbing_v2.0.py	2023-08-01 14:26:40 -04:00
Auden Cote-L'Heureux	bc72d5fca0	Delete .DS_Store	2023-08-01 14:23:49 -04:00
Auden Cote-L'Heureux	9569fec1ed	Updating sisters script to fix rerooting error	2023-08-01 14:23:33 -04:00
Auden Cote-L'Heureux	b947f9c367	Delete ContaminationBySisters_v2.1.py	2023-08-01 14:22:37 -04:00
Auden Cote-L'Heureux	dc85112b98	Fixing codon model option in Guidance wrapper	2023-07-21 14:39:22 -04:00
Auden Cote-L'Heureux	7e2a3b18a7	Rename GuidanceWrapper_v2.0.py to GuidanceWrapper_v2.1.py	2023-07-20 14:50:56 -04:00
Auden Cote-L'Heureux	696a76c39d	Adding codon model option to Guidance wrapper	2023-07-20 14:50:34 -04:00
Auden Cote-L'Heureux	a686bdb360	Adding new version composition script CUB_v2.0.py	2023-07-20 10:02:18 -04:00
Auden Cote-L'Heureux	a14fe19ee0	Delete CUB.py	2023-07-20 10:01:45 -04:00
Auden Cote-L'Heureux	a57736a32c	Add files via upload	2023-07-18 13:06:24 -04:00
Auden Cote-L'Heureux	d8f1db18fa	Uploading new Guidance wrapper	2023-07-17 16:59:43 -04:00
Auden Cote-L'Heureux	2cc6767f95	Delete the old Guidance wrapper	2023-07-17 16:59:31 -04:00
Auden Cote-L'Heureux	cfd582f6ee	Minor changes to PTL2	2023-07-06 15:50:16 -04:00
rebeccagawron	480cf3b9d6	Fix small bug in ContaminationBySisters_v2.1.py	2023-07-05 13:29:32 -04:00
Auden Cote-L'Heureux	5a3ee58177	Add files via upload	2023-07-05 10:36:12 -04:00
Auden Cote-L'Heureux	5624e236d5	Delete ContaminationBySisters_v2.0.py	2023-07-05 10:36:01 -04:00
Auden Cote-L'Heureux	020993b04f	Delete scratch.py	2023-06-15 09:24:50 -04:00
Auden Cote-L'Heureux	7800d18957	Delete UnexpexctedShortStuffBlameXyrus.txt	2023-06-15 09:24:40 -04:00
Auden Cote-L'Heureux	c386268442	Delete PTL1.2831.out	2023-06-15 09:24:31 -04:00