YuuMJ1997/EukPhylo
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Commit Graph

  • 18981a792f
         Delete PTL1/Transcriptomes/Scripts/2b_remove_Bact.py Auden Cote-L'Heureux 2023-09-29 13:19:36 -04:00
  • b6f439e7d6
         Delete PTL1/Transcriptomes/Scripts/2a_remove_rRNA.py Auden Cote-L'Heureux 2023-09-29 13:19:30 -04:00
  • 3e01100304
         Delete PTL1/Transcriptomes/Scripts/1b_XSpeciesContaminationAgnes.py Auden Cote-L'Heureux 2023-09-29 13:19:23 -04:00
  • 67bbdd30b8
         Delete PTL1/Transcriptomes/Scripts/1a_ContigFiltStats.py Auden Cote-L'Heureux 2023-09-29 13:19:12 -04:00
  • 6a0b0ace3a
         Add files via upload Adri K. Grow 2023-09-26 12:49:36 -04:00
  • 032233968d
         Reverting to version of trees.py from before contamination loop work Auden Cote-L'Heureux 2023-09-18 12:58:48 -04:00
  • fe813b678d
         Delete PTL2/Scripts/trees.py Auden Cote-L'Heureux 2023-09-18 12:58:25 -04:00
  • 7d54bb7416
         New script 6 with revised length filtration Auden Cote-L'Heureux 2023-09-18 10:06:36 -04:00
  • 8ccb6eb9a7
         Delete PTL1/Transcriptomes/Scripts/6_FilterPartials.py Auden Cote-L'Heureux 2023-09-18 10:05:39 -04:00
  • 106b2e2d89
         Added annotation to 4_CountOGsDiamond.py Auden Cote-L'Heureux 2023-09-18 10:04:25 -04:00
  • 8e561dc735
         New Script 6 with fixed ciliate genetic code issue Auden Cote-L'Heureux 2023-09-18 10:02:48 -04:00
  • d300ade1b0
         Delete PTL1/Genomes/Scripts/6_SummaryStats.py Auden Cote-L'Heureux 2023-09-18 10:02:35 -04:00
  • 3015aaa2eb
         New Script 4 with added Hook-relative length filter Auden Cote-L'Heureux 2023-09-18 10:02:06 -04:00
  • a45f921955
         Delete PTL1/Genomes/Scripts/4_CountOGsDiamond.py Auden Cote-L'Heureux 2023-09-18 10:01:44 -04:00
  • bceb9ff1de
         Delete PTL1/Genomes/Output directory Auden Cote-L'Heureux 2023-09-13 14:17:43 -04:00
  • 8a2010d510
         Delete PTL1/Transcriptomes/Output directory Auden Cote-L'Heureux 2023-09-13 14:17:32 -04:00
  • e502d2638f
         Add files via upload Adri K. Grow 2023-09-01 14:35:08 -04:00
  • a7832842ae
         Fixed Tree script by Auden Godwin Ani 2023-08-31 13:05:16 -04:00
  • 7af603d7f4
         Delete PTL2/Scripts/trees.py Godwin Ani 2023-08-31 13:04:18 -04:00
  • c1b955d9b2
         Add files via upload Adri K. Grow 2023-08-30 09:32:26 -04:00
  • 5d98dea9ff
         Delete run_phylotol.sh Adri K. Grow 2023-08-30 09:31:58 -04:00
  • c1d8ea93fc
         Add files via upload Adri K. Grow 2023-08-30 09:29:33 -04:00
  • a60fb89a45
         output folder error solved Godwin Ani 2023-08-24 14:46:32 -04:00
  • 13af646e65
         Small fix to ColorByClade_v2.0.py Auden Cote-L'Heureux 2023-08-22 10:00:11 -04:00
  • 59f82e826c
         Small fix to 8_SummaryStats.py Auden Cote-L'Heureux 2023-08-21 13:25:04 -04:00
  • 2f334642d3
         Small fix to 6_SummaryStats.py Auden Cote-L'Heureux 2023-08-21 13:24:42 -04:00
  • d4d1614e61
         Small fix to 6_SummaryStats.py Auden Cote-L'Heureux 2023-08-21 13:11:04 -04:00
  • b1bd9873af
         Adding date to stats summary script outputs Auden Cote-L'Heureux 2023-08-21 13:10:37 -04:00
  • 37c1c36c7a
         Adding date to stat summary script Auden Cote-L'Heureux 2023-08-21 13:07:07 -04:00
  • f253022151
         Fixing 4-fold family error in CUB.py Auden Cote-L'Heureux 2023-08-21 12:47:45 -04:00
  • a24a546ade
         Fixing 4-fold family error in CUB.py Auden Cote-L'Heureux 2023-08-21 12:47:14 -04:00
  • 42ff780332
         Fixing GC3-Degen calculation in CUB script Auden Cote-L'Heureux 2023-08-15 15:35:10 -04:00
  • 3ec4cbfd63
         Delete CUB version with error (2.0) Auden Cote-L'Heureux 2023-08-15 15:34:46 -04:00
  • 366e91256b
         Fixing line splitting bug in GuidanceWrapper_v2.1.py Auden Cote-L'Heureux 2023-08-14 15:01:54 -04:00
  • 943bc3461d
         Adding allowance to backtranslating script for nucleotide sequences shorter than amino acid sequences by 3' trimming Auden Cote-L'Heureux 2023-08-10 10:40:19 -04:00
  • 29daa4932b
         Small update to backtranslating script to account for sequence mismatch Auden Cote-L'Heureux 2023-08-10 10:33:34 -04:00
  • 6324cabb71
         Adding first version of backtranslating script Auden Cote-L'Heureux 2023-08-10 10:24:50 -04:00
  • b08135e9b4
         Removing matplotlib dependency from 8_SummaryStats.py Auden Cote-L'Heureux 2023-08-04 15:05:10 -04:00
  • ab65eb7851
         Removing matplotlib requirement from 6_SummaryStats.py Auden Cote-L'Heureux 2023-08-04 14:29:50 -04:00
  • 7223b4ee60
         Updating tree coloring script to fix rerooting issue and ease input customization Auden Cote-L'Heureux 2023-08-01 14:54:09 -04:00
  • 1457cd604a
         Updating clade grabber to fix rerooting error Auden Cote-L'Heureux 2023-08-01 14:27:49 -04:00
  • 7ba0b238ca
         Delete CladeGrabbing_v2.0.py Auden Cote-L'Heureux 2023-08-01 14:26:40 -04:00
  • bc72d5fca0
         Delete .DS_Store Auden Cote-L'Heureux 2023-08-01 14:23:49 -04:00
  • 9569fec1ed
         Updating sisters script to fix rerooting error Auden Cote-L'Heureux 2023-08-01 14:23:33 -04:00
  • b947f9c367
         Delete ContaminationBySisters_v2.1.py Auden Cote-L'Heureux 2023-08-01 14:22:37 -04:00
  • dc85112b98
         Fixing codon model option in Guidance wrapper Auden Cote-L'Heureux 2023-07-21 14:39:22 -04:00
  • 7e2a3b18a7
         Rename GuidanceWrapper_v2.0.py to GuidanceWrapper_v2.1.py Auden Cote-L'Heureux 2023-07-20 14:50:56 -04:00
  • 696a76c39d
         Adding codon model option to Guidance wrapper Auden Cote-L'Heureux 2023-07-20 14:50:34 -04:00
  • a686bdb360
         Adding new version composition script CUB_v2.0.py Auden Cote-L'Heureux 2023-07-20 10:02:18 -04:00
  • a14fe19ee0
         Delete CUB.py Auden Cote-L'Heureux 2023-07-20 10:01:45 -04:00
  • a57736a32c
         Add files via upload Auden Cote-L'Heureux 2023-07-18 13:06:24 -04:00
  • d8f1db18fa
         Uploading new Guidance wrapper Auden Cote-L'Heureux 2023-07-17 16:59:43 -04:00
  • 2cc6767f95
         Delete the old Guidance wrapper Auden Cote-L'Heureux 2023-07-17 16:59:31 -04:00
  • cfd582f6ee
         Minor changes to PTL2 Auden Cote-L'Heureux 2023-07-06 15:50:16 -04:00
  • 480cf3b9d6
         Fix small bug in ContaminationBySisters_v2.1.py rebeccagawron 2023-07-05 13:29:32 -04:00
  • 5a3ee58177
         Add files via upload Auden Cote-L'Heureux 2023-07-05 10:36:12 -04:00
  • 5624e236d5
         Delete ContaminationBySisters_v2.0.py Auden Cote-L'Heureux 2023-07-05 10:36:01 -04:00
  • 020993b04f
         Delete scratch.py Auden Cote-L'Heureux 2023-06-15 09:24:50 -04:00
  • 7800d18957
         Delete UnexpexctedShortStuffBlameXyrus.txt Auden Cote-L'Heureux 2023-06-15 09:24:40 -04:00
  • c386268442
         Delete PTL1.2831.out Auden Cote-L'Heureux 2023-06-15 09:24:31 -04:00
  • 1a70cae152
         Add files via upload Auden Cote-L'Heureux 2023-06-15 09:16:54 -04:00
  • 207fd815ed
         Update README.md ElinorSterner 2023-06-14 16:00:32 -04:00
  • 4e0d8a63ea
         Add files via upload ElinorSterner 2023-06-14 15:55:17 -04:00
  • 09b2599f3e
         Add files via upload Auden Cote-L'Heureux 2023-06-13 15:06:00 -04:00
  • 69844a6d66
         Add files via upload Auden Cote-L'Heureux 2023-06-13 14:01:17 -04:00
  • 7da3de77e4
         Add files via upload Auden Cote-L'Heureux 2023-06-13 14:00:56 -04:00
  • 165a95fa9d
         Add files via upload Auden Cote-L'Heureux 2023-06-12 13:37:47 -04:00
  • b2079b725d
         Add files via upload Auden Cote-L'Heureux 2023-06-12 13:35:58 -04:00
  • 1a0d8ea54d
         Add files via upload Auden Cote-L'Heureux 2023-06-12 13:34:42 -04:00
  • ef0761d87d
         Delete .DS_Store Auden Cote-L'Heureux 2023-06-12 13:34:20 -04:00
  • 6dc90e0d4c
         Add files via upload Auden Cote-L'Heureux 2023-06-12 13:31:51 -04:00
  • f4b7839ea9
         Delete PTL1/Transcriptomes/Scripts directory Auden Cote-L'Heureux 2023-06-12 13:31:06 -04:00
  • 540af11c9a
         Delete .DS_Store Auden Cote-L'Heureux 2023-06-12 13:30:54 -04:00
  • a55eb0c7f0
         Delete .DS_Store Auden Cote-L'Heureux 2023-06-12 13:30:45 -04:00
  • 7148d95109
         Delete .DS_Store Auden Cote-L'Heureux 2023-06-12 13:30:35 -04:00
  • cc83374ce4
         Add files via upload Auden Cote-L'Heureux 2023-06-12 13:30:20 -04:00
  • 3347fc979a
         Delete PTL1/Genomes/Scripts directory Auden Cote-L'Heureux 2023-06-12 13:30:05 -04:00
  • f77ece5a2a
         Add files via upload Auden Cote-L'Heureux 2023-06-12 13:25:29 -04:00
  • f8818d372c
         Delete PTL2/Data directory Auden Cote-L'Heureux 2023-06-12 13:24:27 -04:00
  • e12e9f98c8
         Delete PTL2/Scripts-GRID directory Auden Cote-L'Heureux 2023-06-12 13:23:51 -04:00
  • 7d513beb64
         Delete PTL2/Scripts-DEV directory Auden Cote-L'Heureux 2023-06-12 13:23:23 -04:00
  • 63d574c64f
         Delete .DS_Store Auden Cote-L'Heureux 2023-06-12 13:22:53 -04:00
  • 58294fa143
         Delete .DS_Store Auden Cote-L'Heureux 2023-06-12 13:19:24 -04:00
  • 9582f9d1e6
         Update assess_transcriptomes.py ElinorSterner 2023-06-09 11:42:49 -04:00
  • e907e048ff
         Update README.md ElinorSterner 2023-06-08 17:20:11 -04:00
  • a86a7d7610
         Update assess_transcriptomes.py ElinorSterner 2023-06-08 17:17:12 -04:00
  • 0a6f22b989
         Annotating PlotComps.R Auden Cote-L'Heureux 2023-05-05 10:41:20 -04:00
  • 17634fbfe0
         Added composition script to utilities Auden Cote-L'Heureux 2023-05-05 10:40:04 -04:00
  • 3a04093eb6
         Update README.md ElinorSterner 2023-04-24 13:37:18 -04:00
  • 1d7f73f6c1
         Update assess_transcriptomes.py ElinorSterner 2023-04-24 13:36:12 -04:00
  • 9d42351d52
         Update README.md ElinorSterner 2023-04-09 13:13:48 -04:00
  • d0fb1cb352
         Update README.md ElinorSterner 2023-04-07 16:04:43 -04:00
  • 88155175f7
         Add files via upload ElinorSterner 2023-04-07 15:45:43 -04:00
  • d685f5ecec
         Update README.md ElinorSterner 2023-04-07 15:44:24 -04:00
  • 45df9546c9
         Update README.md ElinorSterner 2023-04-05 16:01:05 -04:00
  • 8d42d49c48
         Update assess_transcriptomes.py ElinorSterner 2023-04-05 15:53:14 -04:00
  • 3a2e7476e2
         Add files via upload ElinorSterner 2023-04-03 16:18:33 -04:00
  • 55e1f71854
         Create assess_transcriptomes.py ElinorSterner 2023-04-03 16:17:48 -04:00
  • 2d66ff52d3
         Add files via upload ElinorSterner 2023-03-21 15:05:09 -04:00
  • 182615bf75
         Add files via upload Adri K. Grow 2023-03-09 15:47:24 -05:00