purpose "compute bootstrap values and consensus trees from a list of trees"
package "bootstrap"
version "1.0.a1"

# test default values

#files 
option  "treesList"		t    "filename of list of input trees"		string					yes
option  "reftree"		r    "Refremce Tree file name"			string					no
option  "outputfile"		o    "Output tree file"     			string 	default="-"			no
option  "Logfile"		l    "Log file output name"			string 	default="-"			no
#options
option  "verbose"  		v    "Log report level (verbose)"		int    	default="0"			no
option  "ConsensusLevel"       	c    "use only branches with sport above this"	float 	default="0.5"			no
option  "noBranchLen"   b    "Do not output branch lengths in output tree" flag  off