" 27 " " 98 32 " " 120 0 905 " " 36 23 0 0 " " 89 246 103 134 0 " " 198 1 148 1153 0 716 " " 240 9 139 125 11 28 81 " " 23 240 535 86 28 606 43 10 " " 65 64 77 24 44 18 61 0 7 " " 41 15 34 0 0 73 11 7 44 257 " " 26 464 318 71 0 153 83 27 26 46 18 " " 72 90 1 0 0 114 30 17 0 336 527 243 " " 18 14 14 0 0 0 0 15 48 196 157 0 92 " " 250 103 42 13 19 153 51 34 94 12 32 33 17 11 " " 409 154 495 95 161 56 79 234 35 24 17 96 62 46 245 " " 371 26 229 66 16 53 34 30 22 192 33 136 104 13 78 550 " " 0 201 23 0 0 0 0 0 27 0 46 0 0 76 0 75 0 " " 24 8 95 0 96 0 22 0 127 37 28 13 0 698 0 34 42 61 " " 208 24 15 18 49 35 37 54 44 889 175 10 258 12 48 30 157 0 28 " " 0.087127 0.040904 0.040432 0.046872 0.033474 0.038255 0.049530 " " 0.088612 0.033618 0.036886 0.085357 0.080482 0.014753 0.039772 " " 0.050680 0.069577 0.058542 0.010494 0.029916 0.064718 " " Ala Arg Asn Asp Cys Gln Glu Gly His Ile Leu Lys Met Phe Pro Ser Thr Trp Tyr Val " " S_ij = S_ji and PI_i for the Dayhoff model, with the rate Q_ij=S_ij*PI_j " " The rest of the file is not used. " " Prepared by Z. Yang, March 1995. " " See the following reference for notation used here: " " Yang, Z., R. Nielsen and M. Hasegawa. 1998. Models of amino acid substitution and " " applications to mitochondrial protein evolution. Mol. Biol. Evol. 15:1600-1611. " " ----------------------------------------------------------------------- " " " " 30 " " 109 17 " " 154 0 532 " " 33 10 0 0 " " 93 120 50 76 0 " " 266 0 94 831 0 422 " " 579 10 156 162 10 30 112 " " 21 103 226 43 10 243 23 10 " " 66 30 36 13 17 8 35 0 3 " " 95 17 37 0 0 75 15 17 40 253 " " 57 477 322 85 0 147 104 60 23 43 39 " " 29 17 0 0 0 20 7 7 0 57 207 90 " " 20 7 7 0 0 0 0 17 20 90 167 0 17 " " 345 67 27 10 10 93 40 49 50 7 43 43 4 7 " " 772 137 432 98 117 47 86 450 26 20 32 168 20 40 269 " " 590 20 169 57 10 37 31 50 14 129 52 200 28 10 73 696 " " 0 27 3 0 0 0 0 0 3 0 13 0 0 10 0 17 0 " " 20 3 36 0 30 0 10 0 40 13 23 10 0 260 0 22 23 6 " " 365 20 13 17 33 27 37 97 30 661 303 17 77 10 50 43 186 0 17 " " A R N D C Q E G H I L K M F P S T W Y V " " Ala Arg Asn Asp Cys Gln Glu Gly His Ile Leu Lys Met Phe Pro Ser Thr Trp Tyr Val " " Accepted point mutations (x10) Figure 80 (Dayhoff 1978) " " ------------------------------------------------------- " " A 100 /* Ala */ A 0.087 /* Ala */ " " R 65 /* Arg */ R 0.041 /* Arg */ " " N 134 /* Asn */ N 0.040 /* Asn */ " " D 106 /* Asp */ D 0.047 /* Asp */ " " C 20 /* Cys */ C 0.033 /* Cys */ " " Q 93 /* Gln */ Q 0.038 /* Gln */ " " E 102 /* Glu */ E 0.050 /* Glu */ " " G 49 /* Gly */ G 0.089 /* Gly */ " " H 66 /* His */ H 0.034 /* His */ " " I 96 /* Ile */ I 0.037 /* Ile */ " " L 40 /* Leu */ L 0.085 /* Leu */ " " K 56 /* Lys */ K 0.081 /* Lys */ " " M 94 /* Met */ M 0.015 /* Met */ " " F 41 /* Phe */ F 0.040 /* Phe */ " " P 56 /* Pro */ P 0.051 /* Pro */ " " S 120 /* Ser */ S 0.070 /* Ser */ " " T 97 /* Thr */ T 0.058 /* Thr */ " " W 18 /* Trp */ W 0.010 /* Trp */ " " Y 41 /* Tyr */ Y 0.030 /* Tyr */ " " V 74 /* Val */ V 0.065 /* Val */ " " scale factor = SUM_OF_PRODUCT = 75.246 " " Relative Mutability The equilibrium freqs. " " (Table 21) Table 22 " " (Dayhoff 1978) Dayhoff (1978) " " ---------------------------------------------------------------- "