#! /bin/tcsh -f


echo "NJ with Constraints"

foreach ct (lys_test*.ctree)
    echo $ct
    cat $ct
    echo ""
    echo 'Running "../semphy -H -s lys6.seq   --jtt -c '$ct'  -v5 -J"'
    echo ""
   ../semphy -H -s lys6.seq   --jtt -c $ct  -v5 -J
    echo ""
    echo ""
end