> :warning: ** This is currently being dockerised! ** Use the container at your own peril! # **EukPhylo version 1.0** EukPhylo is an updated version of the PhyloToL pipeline from the [Katz Lab](https://www.science.smith.edu/katz-lab/) at Smith College. EukPhylo is a phylogenomic toolkit for processing transcriptomic and genomic data that includes novel phylogeny-informed contamination removal techniques. See our [Wiki](https://github.com/Katzlab/EukPhylo/wiki) for more information on installation and usage! ## Dockerfile The docker file can be executed with: ```bash # Build the container docker build -f Dockerfile.txt . --tag eukphylo:1 # Get the container IMAGE_ID docker image list # Current command is: docker run -it \ --mount type=bind,src=$(pwd)/databases,dst=/Databases \ --mount type=bind,src=$(pwd)/input_data,dst=/Input_data \ --mount type=bind,src=$(pwd)/output_data,dst=/Output_data \ eukphylo ``` After development, GitHub CICD workflows can be added to automatically build and release the dockerfile for the end user.