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19 lines
791 B
Bash
19 lines
791 B
Bash
#!/bin/bash
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#
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#SBATCH --job-name=Gigi_spades
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#SBATCH --output=rnaSPAdes_run.%j.out # Stdout (%j expands to jobId)
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#SBATCH --nodes=1
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#SBATCH --ntasks=1
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#SBATCH --ntasks-per-node=64
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#SBATCH --mem=180G
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#SBATCH --mail-type=ALL
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#SBATCH --mail-user=xxx@xxx.edu
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module purge #Cleans up any loaded modules
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module load SPAdes
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rnaspades.py -m 500 -t 50 -1 ToAssemble/SRR26595464_FPE_q24_minlen75.fastq.gz -2 ToAssemble/SRR26595464_RPE_q24_minlen75.fastq.gz -o Assembled/SRR26595464
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rnaspades.py -m 500 -t 50 -1 ToAssemble/SRR26595465_FPE_q24_minlen75.fastq.gz -2 ToAssemble/SRR26595465_RPE_q24_minlen75.fastq.gz -o Assembled/SRR26595465
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rnaspades.py -m 500 -t 50 -1 ToAssemble/SRR26595468_FPE_q24_minlen75.fastq.gz -2 ToAssemble/SRR26595468_RPE_q24_minlen75.fastq.gz -o Assembled/SRR26595468
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