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22 lines
708 B
C++
22 lines
708 B
C++
// $Id: distanceTable.cpp 1740 2007-02-26 13:53:10Z itaymay $
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#include "definitions.h"
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#include "distanceTable.h"
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void giveDistanceTable(const distanceMethod* dis,
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const sequenceContainer& sc,
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VVdouble& res,
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vector<string>& names,
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const vector<MDOUBLE> * weights){
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res.resize(sc.numberOfSeqs());
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for (int z=0; z< sc.numberOfSeqs();++z) res[z].resize(sc.numberOfSeqs(),0.0);
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for (int i=0; i < sc.numberOfSeqs();++i) {
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for (int j=i+1; j < sc.numberOfSeqs();++j) {
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res[i][j] = dis->giveDistance(sc[sc.placeToId(i)],sc[sc.placeToId(j)],weights,NULL);
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//LOG(5,<<"res["<<i<<"]["<<j<<"] ="<<res[i][j]<<endl);
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}
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names.push_back(sc[sc.placeToId(i)].name());
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}
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}
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