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30 lines
703 B
C++
30 lines
703 B
C++
// $Id: njConstrain.h 962 2006-11-07 15:13:34Z privmane $
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#ifndef ___NJ_CONSTRAINT
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#define ___NJ_CONSTRAINT
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#include <map>
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#include "sequenceContainer.h"
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#include "tree.h"
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using namespace std;
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class njConstraint {
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public:
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njConstraint(const tree& starttree, const tree& constraintTree);
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bool isCompatible(const tree::nodeP& n1, const tree::nodeP& n2, const bool verbose=false) const;
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void join(const tree::nodeP& n1, const tree::nodeP& n2, const tree::nodeP& newFather);
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void output(ostream &out) const;
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private:
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tree _cTree; // constriant tree
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map<tree::nodeP,tree::nodeP> _interTreeMap;
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};
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ostream &operator<<(ostream &out, const njConstraint &c);
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#endif // ___NJ_CONSTRAINT
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