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37 lines
995 B
C++
37 lines
995 B
C++
// $Id: tamura92.h 962 2006-11-07 15:13:34Z privmane $
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#ifndef ___TAMURA92
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#define ___TAMURA92
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#include "replacementModel.h"
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#include <cmath>
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class tamura92 : public replacementModel {
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public:
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explicit tamura92(const MDOUBLE theta,
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const MDOUBLE TrTv);
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virtual replacementModel* clone() const { return new tamura92 (*this); }
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const int alphabetSize() const {return 4;}
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inline void changeTrTv(const MDOUBLE TrTv) { _TrTv = TrTv; }
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void changeTheta(const MDOUBLE theta);
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MDOUBLE getTrTv() const {return _TrTv;}
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MDOUBLE getTheta() const {return _theta;}
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const MDOUBLE Pij_t(const int i,const int j, const MDOUBLE d) const;
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const MDOUBLE dPij_dt(const int i,const int j, const MDOUBLE d) const;
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const MDOUBLE freq(const int i) const {return _freq[i];};
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const MDOUBLE d2Pij_dt2(const int i,const int j, const MDOUBLE d) const;
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const MDOUBLE dPij_tdBeta(const int i, const int j, const MDOUBLE t) const;
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private:
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Vdouble _freq;
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MDOUBLE _theta;
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MDOUBLE _TrTv;
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};
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#endif
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