mirror of
http://43.156.76.180:8026/YuuMJ/EukPhylo.git
synced 2025-12-28 07:10:24 +08:00
46 lines
858 B
C++
46 lines
858 B
C++
// $Id: rearangeTree.h 409 2005-06-28 13:12:24Z ninio $
|
|
|
|
#ifndef ___REARANGE___TREE
|
|
#define ___REARANGE___TREE
|
|
|
|
#include <set>
|
|
using namespace std;
|
|
|
|
#include "semphyDistance.h"
|
|
#include "tree.h"
|
|
|
|
|
|
class rearrangeTree {
|
|
public:
|
|
typedef pair<int,int> intPair;
|
|
typedef set<intPair> pairSet;
|
|
|
|
rearrangeTree(
|
|
pairSet* inNodeSet,
|
|
const semphyDistance* aSD);
|
|
|
|
void reconstructTree(tree& t1);
|
|
private:
|
|
|
|
void recursiveReconstructTree(vector<tree::nodeP>& all,
|
|
tree::nodeP inNode,
|
|
tree::nodeP fatherNode);
|
|
|
|
bool nodeConnectedTo(const intPair& inPair,
|
|
const int inNodeID, int &nextSonId);
|
|
|
|
void getNodeVectorFromId(vector<tree::nodeP>& all) const;
|
|
|
|
|
|
private:
|
|
tree* _t1;
|
|
pairSet* _nodesSet;
|
|
const semphyDistance* _semDist;
|
|
};
|
|
|
|
ostream& operator<< (ostream &sout, const rearrangeTree::intPair& rpair);
|
|
|
|
|
|
#endif
|
|
|