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31 lines
710 B
C++
31 lines
710 B
C++
// $Id: bblEMSeperate.h 962 2006-11-07 15:13:34Z privmane $
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#ifndef ___BBL_EM_SEPERATE_H
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#define ___BBL_EM_SEPERATE_H
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#include "definitions.h"
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#include "tree.h"
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#include "stochasticProcess.h"
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#include "sequenceContainer.h"
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#include <vector>
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using namespace std;
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class bblEMSeperate {
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public:
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explicit bblEMSeperate(vector<tree>& et,
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const vector<sequenceContainer>& sc,
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const vector<stochasticProcess> &sp,
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const vector<Vdouble *> * weights,
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const int maxIterations=50,
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const MDOUBLE epsilon=0.05,
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const MDOUBLE tollForPairwiseDist=0.0001);
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MDOUBLE getTreeLikelihood() const {return _treeLikelihood;}
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private:
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MDOUBLE _treeLikelihood;
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};
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#endif
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