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42 lines
1.5 KiB
C++
42 lines
1.5 KiB
C++
// $Id: ussrvModel.h 962 2006-11-07 15:13:34Z privmane $
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#ifndef _USSRV_MODEL
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#define _USSRV_MODEL
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#include "stochasticProcessSSRV.h"
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#include "stochasticProcess.h"
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#include "errorMsg.h"
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#include "gammaDistribution.h"
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#include "replacementModelSSRV.h"
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#include "logFile.h"
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class ussrvModel
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{
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public:
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explicit ussrvModel(){errorMsg::reportError("This constractor shold never be used");}
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explicit ussrvModel(const stochasticProcess& baseSp, const stochasticProcessSSRV& ssrvSp, const MDOUBLE& f);
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virtual ~ussrvModel();
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explicit ussrvModel(const ussrvModel& other);
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ussrvModel& operator=(const ussrvModel& other);
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// const int alphabetSize() const ;
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MDOUBLE getF() const {return _f;}
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MDOUBLE getAlpha() const {return _alpha;}
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MDOUBLE getNu() const ;
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const stochasticProcessSSRV& getSSRVmodel() const {return *_ssrvSp;}
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const stochasticProcess& getBaseModel() const {return *_baseSp;}
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int noOfCategor() const {return _baseSp->categories();}
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MDOUBLE getCategorProb(int i) const {return _baseSp->distr()->ratesProb(i);}
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void updateF(const MDOUBLE& f);
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void updateAlpha(const MDOUBLE& alpha);
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void updateNu(const MDOUBLE& nu);
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MDOUBLE calcNormalizeFactor(); // return the factor according to which the model should be normalized.
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private:
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MDOUBLE _f; //probability of SSRV model. The probability of the base model, i.e. no SSRV, is 1-_f .
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MDOUBLE _alpha; // should be always equal to the _baseSp alpha and the _ssrvSp alpha.
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stochasticProcess* _baseSp; // for the base model
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stochasticProcessSSRV* _ssrvSp; // for the SSRV model
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};
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#endif // _USSRV_MODEL
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