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EukPhylo/PTL2/Scripts-GRID/trimal-trimAl/dataset/example.094.DNADeg.sequential_phy
Katzlab dd76ab1d12 Added PTL2 Scripts 
These are PTL2 files from Auden 2/9
2023-02-14 11:20:52 -05:00

157 lines
10 KiB
Plaintext
Raw Blame History

12 637 I
VRA17 CGTATAAAAT TCTAGATAGA AAACAGATAA TGACAACTTT CTATCTATTA
GTCTTGACCA AATTACGTGC CAGCAGTCGC GGCAACACGC AGAAGACAAG
TGTTATTCAT CTTAAACAGG TATAAAGGGT ACCTAGACGG GAAATCAAGC
CAGAAGGGAC TAATATTCTA GAGTTTTATG GGTGAAAGTC GAATGTCTGG
AGTAGAGATT AAATATTGTA ATACTGGATG GACCGACAAC GGCGTAGGCA
GCTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTA GGTAGCAATA
TGGATTAGAT ACCCCGGTAG TCCAGGGAGA AAATGATGAG TGCCATAGGT
TAGTGAAGTT AGCCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGAGTA
AGGCGGCAAC GCGCAAATTG AAATCATTAG ACCGTTCCTG AAACCAGTAA
TGAAGTATGT TGTTTAATTC GATGATCCGC GAATAACCTT ACCACGTCTT
GAATAC-TTT TTGTAAAAGC AGTTGTACAA GCGCTGCACG GCTGCCTTTA
GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAGCCCTTG
ACAGTTCTCC GCTATATTGG ATAAGATAAC TGGGATT
VXA14085 CGTATAAAAT TCTAGATAGA AAACAGATAA TGACAACTTT CTATCTATTA
GTCTTGACCA AATTACGTGC CAGCAGTCGC GGCAACACGC AGAAGACAAG
TGTTATTCAT CTTAAACAGG TATAAAGGGT ACCTAGACGG GAAATCAAGC
CAGAAGGGAC TAATATTCTA GAGTTTTATG GGTGAAAGTC GAATGTCTGG
AGTAGAGATT AAATATTGTA ATACTGGATG GACCGACAAC GGCGTAGGCA
GCTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTA GGTAGCAATA
TGGATTAGAT ACCCCGGTAG TCCAGGGAGA AAATGATGAG TGCCATAGGT
TAGTGAAGTT AGCCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGAGTA
AGGCGGCAAC GCGCAAATTG AAATCATTAG ACCGTTCCTG AAACCAGTAA
TGAAGTATGT TGTTTAATTC GATGATCCGC GAATAACCTT ACCACGTCTT
GAATAC-TTT TTGTAAAAGC AGTTGTACAA GCGCTGCACG GCTGCCTTTA
GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAGCCCTTG
ACAGTTCTCC GCTATATTGG ATAAGATAAC TGGGATT
VandXX8Z AAAATTAAAT TCTAGATAGA ATAATGATGA TGACAATTTT CTATCTATAA
GTCTTGACCA AATTACGTGC CAGCAGTCGC GGTAATACGT AGAAGACAAG
TGTTATTCRT CTTTAGTGGG TTTAAAGGGT ACCTAGACAG GAAATAAAGC
CAAAAGGGAC TAATTTCCTA GAGTTTTATG TGAGAATGTT GAACTATCAG
AGGAGAGTCA AAATTTTTTG ATACTGGTGG GACAGGTAAC GGCGAAGGCG
ACATTCTATG TAAAAACTGA CGTTGAGGAA CGAAGCCTAG GGTAGCGATA
AGGATTAGAT ACCCCAGTAG TCCTAGGAGA AAATTATGAG TGCCATAGGC
TAGATATATT AGTTTATAAA TGAAAGTGTA AGCATTCCAC CTCATGAGTA
AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAACTARTAS
TGAAGTATGT TATTTAATTC GATGATCCCC GAATAACCTT ACCACGCATT
GCATAA---- ---------- --TATTACAA GCGCTGCACG GCTGTCTGCA
GTTAATGTCG TGAGATCCTG GTTAGTTCCT TAAATTAACG AAAGCCCTTG
ACGCTGGACC ATTAGCATTG GGACAATAAT AGGGACT
Vand17402 CGTATAAAGT TCTAGATATA ATAATGAATA TGACAATTTT ATATCTATAA
GTCTTGACCA AATTACGTGC CAGCAGTCGC GGTAATACGT AGAAGACAAG
TGTTATTCAT CTTTAATGGG TTTAAAGGGT ACCTAGACAG AAAATCAAGC
CAATAGGGAC TAATTTTCTA GAGTTTCAAG TGAGAATGAC GAATTACCAG
AGGAGAGTCA AAATTTTATG ATACTGGTAG GACGGGTAAC GGCGAAGGCG
ACATTCTATA TAAAAACTGA CGTTGAGGGA CGAAGCCTTG GGTAGCGATA
AGGATTARAT ACCCTAGTAG TCCAGGGAGA AAATTATGAG TGCCATAGGC
TAGATAAGTT AGCTTATAAA TGAAAGTGTA AGCATTCCAC CTCWTGAGTA
AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAATCAGTAG
TGAAGTATGT TATTTAATTC GATGGTCCGS GAATAACCTT AYCACGCTTT
---------- ---------- ---------- ---------- ----------
---------- ---------- ---------- ---------- ----------
---------- ---------- ---------- -------
VfunS CGTATAAAAT TCTAGATAGA AAACTGATAA TGACAACTAT CTATCTATTA
GTCTTGACCA AATTACGTGC CAGCAGTCGC GGCAACACGC AGAAGACAAG
TGTTATTCAT CTTTAAAAGG TATAAAGGGT ACCTAGACGG GGAATCAAGC
CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAATGTCTGG
AGTAGAGATA TAATATTGTG ATACTAGATG GACGGGCAAC GGCGTAGGCA
ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAGCAATA
AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
TAGATAAATT AGCCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGAGTA
AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTCCTG AAACCAGTAG
TGAAGTATGT TGTTTAATTC GATGATCCGC GAATAACCTT ACCACGTTTT
GAATAC-TTT TTGTAAAAGC AGTTGTACAA GCGCTGCACG GCTGTCTTTA
GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT
Vfun1171 CGTATAAAAT TCTAGATAGA AAACTGATAA TGACAACTAT CTATCTATTA
GTCTTGACCA AATTACGTGC CAGCAGTCGC GGCAACACGC AGAAGACAAG
TGTTATTCAT CTTTAAAAGG TATAAAGGGT ACCTAGACGG GGAATCAAGC
CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAATGTCTGG
AGTAGAGATA TAATATTGTG ATACTAGATG GACGGGCAAC GGCGTAGGCA
ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAGCAATA
AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
TAGATAAATT AGCCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGAGTA
AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTCCTG AAACCAGTAG
TGAAGTATGT TGTTTAATTC GATGATCCGC GAATAACCTT ACCACGTTTT
GAATAC-TTT TTGTAAAAGC AGTTGTACAA GCGCTGCACG GCTGTCTTTA
GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT
Vfun1047 CGTATAAAAT TCTAGATAGA AAACTGATAA TGACAACTAT CTATCTATTA
GTCTTGACCA AATTACGTGC CAGCAGTCGC GGCAACACGC AGAAGACAAG
TGTTATTCAT CTTTAAAAGG TATAAAGGGT ACCTAGACGG GGAATCAAGC
CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAATGTCTGG
AGTAGAGATA TAATATTGTG ATACTAGATG GACGGGCAAC GGCGTAGGCA
ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAGCAATA
AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
TAGATAAATT AGCCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGAGTA
AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTCCTG AAACCAGTAG
TGAAGTATGT TGTTTAATTC GATGATCCGC GAATAACCTT ACCACGTTTT
GAATAC-TTT TTGTAAAAGC AGTTGTACAA GCGCTGCACG GCTGTCTTTA
GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT
Vhyd18793 CGTATAAAAT TCTAGATAAA AAACTGATAA TGACAACTCT TTATCTATTA
GTCTTGACCA AATTACGTGC CAGCAGTCGC GGTAACACGC AGAAGACAAG
TGTTATTCAT CTTTATTCGG TTTAAAGGGT ACCTAGACGG GAAATCAAGC
CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAACATCTGG
AGTAGAGATA AAATATTGTG ATACCAGATG GACGGGTAAC GGCGTAGGCA
ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAACGATA
AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
TAGATAAATT AGTCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGACTA
AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAACCAGTAG
TGAAGTATGT TATTTAATTC GATAATCCGC GAATAACCTT ACCACGTTTT
GAATAT-CTT TTGGGGGATC ACTTTTACAA GCGCTGCACG GCTGTCTTTA
GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT
Vdol16777 CGTATAAAAT TCTAGATAAA AAACTGATAA TGACAACTAT TTATCTATTA
GTCTTGACCA AATTACGTGC CAGCAGTCGC GGCAACACGC AGAAGACAAG
TGTTATTCAT CTTTATTCGG TTTAAAGGGT ACCTAGACGG GAAATCAAGC
CAGTAGGGAC TAATTTTCTA GAGTTTTATG GAAGAAAGTC GAACACCTGG
AGTAGAGATA AAATATTGTG ATACCAGATG GACGGGTAAC GGCGTAGGCA
ACTTTCTATA TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAACGATA
AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
TAGATAAATT AGTCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGACTA
AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAACCAGTAG
TGAAGTATGT CATTTAATTC GATGATCCGC GAATAACCTT ACCACGTTTT
GAATAT-CTT TTGGGGGATC GCTTATACAA GTGCTGCACG GCTGTCTTTA
GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT
Vhyd16290 CGTATAAAAT TCTAGATAAA AAACTGATAA TGACAACTCT TTATCTATTA
GTCTTGACCA AATTACGTGC CAGCAGTCGC GGTAACACGC AGAAGACAAG
TGTTATTCAT CTTTATTCGG TTTAAAGGGT ACCTAGACGG KAAATCAAGC
CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAACATCTGG
AGTAGAGATA AAATATTGTG ATACCAGATG GACGGGTAAC GGCGTAGGCA
ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAACGATA
AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
TAGGTAAATT AGTCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGACTA
AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAACCAGTAG
TGAAGTATGT TATTTAATTC GATAATCCGC GAATAACCTT ACCACGTTTT
GAATAT-CTT TTGGGGGATC ACTTTTACAA GCGCTGCACG GCTGTCTTTA
GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT
Vhyd16621 ---------- ---------- ---------- ---------- ----------
-TCTTGACCA AATTACGTGC CAGCAGTCGC GGTAACACGC AGAAGACAAG
TGTTATTCAT CTTTATTCGG TTTAAAGGGT ACCTAGACGG GAAATAAAGC
CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAACATCTGG
AGTAGAGATA AAATATTGTG ATACCAGATG GACGGGTAAC GGCGTAGGCA
ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAACGATA
AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
TAGGTAAATT AGTCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGACTA
AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAACCAGTAG
TGAAGTATGT TATTTAATTC GATAATCCGC GAATAACCTT ACCACGTTTT
GAATAT-CTT TTGGGGGATC ACTTTTACAA GCGCTGCACG GCTGTCTTTA
GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
---------- ---------- ---------- -------
Vhyd16776 CGTATAAAAT TCTAGATAAA AAACTGATRA TGACAACTCT TTATCTATTA
GTCTTGACCA AATTACGTGC CAGCAGTCGC GGTAACACGC AGAAGACAAG
TGTTATTCAT CTTTATTCGG TTTAAAGGGT ACCTAGACGG GAAATCAAGC
CAGTAGGGAC TAATTTTCTA GAGTTTTATG GGAGAAAGTC GAACATCTGG
AGTAGAGATA AAATATTGTG ATACCAGATG GACGGGTAAC GGCGTAGGCA
ACTTTCTATG TAAAAACTGA CGTTGAGGGA CGAAGCCCTG GGTAACGATA
AGGATTAGAT ACCCCAGTAG TCCAGGGAGA CAATGATGAG TGCCATAGGC
TAGATAAATT AGTCTATAAA TGAAAGTGCA AGCATTCCAC CTCAAGACTA
AAGCGGCAAC GCCCAAATTG AAATCATTAG ACCGTTTCTG AAACCAGTAG
TGAAGTATGT TATTTAATTC GATAATCCGC GAATAACCTT ACCACGTTTT
GAATAT-CTT TTGGGGGATC ACTTTTACAA GCGCTGCACG GCTGTCTTTA
GTTAATGTCG TGAGACTTTG GTTAACTCCT TTAATTAACG AAAACCCTTG
ACAGTTCTCC GCTATATTGG ATAAGATAAT AGGGATT
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