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25 lines
664 B
C++
25 lines
664 B
C++
// $Id: distanceMethod.h 962 2006-11-07 15:13:34Z privmane $
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#ifndef ___DISTANCE_METHOD
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#define ___DISTANCE_METHOD
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#include "definitions.h"
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#include "sequence.h"
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/*********************************************************
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Distance method is a class for computing pairwise distance
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between 2 different sequences
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*******************************************************/
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class distanceMethod {
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public:
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virtual const MDOUBLE giveDistance(const sequence& s1,
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const sequence& s2,
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const vector<MDOUBLE> * weights=NULL,
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MDOUBLE* score=NULL) const=0;
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virtual distanceMethod* clone(void) const=0;
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virtual ~distanceMethod() {}
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};
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#endif
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