mirror of
http://43.156.76.180:8026/YuuMJ/EukPhylo.git
synced 2025-12-28 07:10:24 +08:00
245 lines
5.1 KiB
Makefile
245 lines
5.1 KiB
Makefile
# this looks better in -*- Makefile -*- mode
|
|
# $Id: Makefile.generic 12479 2014-08-06 15:12:07Z haim $
|
|
|
|
DEBUGEXEC = $(EXEC:=.debug)
|
|
|
|
|
|
#TEST_EXEC_SUB =
|
|
TEST_EXEC = $(addprefix tests/,$(TEST_EXEC_SUB))
|
|
|
|
ifdef LIBNAME
|
|
ifneq ($(LIBNAME),"")
|
|
LIB = lib$(LIBNAME).a
|
|
endif
|
|
endif
|
|
DEBUGLIB = $(LIB:.a=Debug.a)
|
|
DOUBLEREPLIB = $(LIB:.a=DoubleRep.a)
|
|
|
|
all: lib $(EXEC)
|
|
|
|
#CC=g++
|
|
CXX=g++
|
|
CC=$(CXX)
|
|
|
|
libDir=../../libs/phylogeny
|
|
binDir=../../bin
|
|
|
|
ifndef libEvol
|
|
libEvol=$(libDir)/libEvolTree.a
|
|
#libEvol=-lEvolTree
|
|
libEvolDebug=$(libDir)/libEvolTreeDebug.a
|
|
libEvolDoubleRep=$(libDir)/libEvolTreedoubleRep.a
|
|
endif
|
|
|
|
vpath % $(libDir)
|
|
|
|
|
|
#CPPFLAGS+= -I/usr/include/g++-v3
|
|
|
|
LDFLAGS += -L$(libDir)
|
|
|
|
#LDLIBS = -lEvolTree
|
|
#debug: LDLIBS = -lEvolTreeDebug
|
|
# LOADLIBES = $(LIB)
|
|
|
|
#LDFLAGS=
|
|
#CPPFLAGS+= -DLOG -DLOGCLS -DMEMCHK
|
|
|
|
|
|
#GENGETOPT=/cs/++/phd/ninio/gengetopt-2.11/src/gengetopt
|
|
#GENGETOPT = /opt/local/bin/gengetopt
|
|
#GENGETOPT = ~privmane/code/gengetopt
|
|
GENGETOPT = gengetopt
|
|
|
|
.SECONDARY: $(addsuffix _cmdline.c,$(EXEC)) $(addsuffix _cmdline.h,$(EXEC)) $(addsuffix .ggo,$(EXEC))
|
|
|
|
CPPFLAGS= -O3 -Wall -Wno-sign-compare -I. -I$(libDir) -DLOG
|
|
CPPFLAGSDEBUG= -g -Wall -Wno-sign-compare -I. -I$(libDir) -DLOG
|
|
|
|
LDFLAGSDEBUG := $(LDFLAGS) -g
|
|
# sources
|
|
sources= $(Libsources) $(LibCsources) $(addsuffix .cpp,$(EXEC) $(TEST_EXEC))
|
|
|
|
.PHONY: tests lib test debug %.debug DOUBLEREP doubleRep
|
|
|
|
ifdef DOUBLEREP
|
|
CPPFLAGS+= -DDOUBLEREP
|
|
CPPFLAGSDEBUG += -DDOUBLEREP
|
|
LDFLAGSDEBUG += -DDOUBLEREP
|
|
endif
|
|
|
|
test: all tests
|
|
+cd tests && make -k
|
|
|
|
debug: $(DEBUGLIB) $(DEBUGEXEC)
|
|
|
|
debug: CPPFLAGS = $(CPPFLAGSDEBUG)
|
|
#debug: LDLIBS = -lEvolTreeDebug
|
|
debug: LIB = $(DEBUGLIB)
|
|
# debug: CPPFLAGS = -g -Wall -Wno-sign-compare -I. -I$(libDir) -DLOG
|
|
# debug: all
|
|
|
|
|
|
|
|
|
|
#$(libEvol) le:
|
|
# +cd $(libDir);make -f Makefile all
|
|
|
|
#$(libEvolDebug):
|
|
# +cd $(libDir);make -f Makefile debug
|
|
|
|
lib: $(LIB)
|
|
|
|
#lib$(LIBNAME).a: lib$(LIBNAME).a($(Libsources:.cpp=.o) $(LibCsources:.c=.o))
|
|
lib$(LIBNAME).a: $(Libsources:.cpp=.o) $(LibCsources:.c=.o)
|
|
ar rv $@ $?
|
|
ranlib $@
|
|
|
|
tags: *.cpp *.h
|
|
etags --members --language=c++ $^
|
|
EVOLLIB=-lEvolTree
|
|
libEvolDebug=-lEvolTreeDebug
|
|
libEvolDoubleRep=-lEvolTreeDoubleRep
|
|
|
|
debug: EVOLLIB=$(libEvolDebug)
|
|
|
|
ifdef LIBNAME
|
|
# LocalLib = -l$(LIBNAME)
|
|
LocalLib = lib$(LIBNAME).a
|
|
endif
|
|
|
|
#$(EXEC): LDLIBS += $(EVOLLIB)
|
|
#$(EXEC) $(TEST_EXEC): $(LIB) #$(EVOLLIB)
|
|
#$(EXEC) $(TEST_EXEC): $(LIB) $(EVOLLIB)
|
|
$(EXEC) $(TEST_EXEC): $(LocalLib) $(libEvol)
|
|
$(DEBUGEXEC) $(TEST_EXEC): $(DEBUGLIB) $(libEvolDebug)
|
|
|
|
tests: $(TEST_EXEC) $(EXEC)
|
|
|
|
-include make.dep
|
|
|
|
install: $(addprefix $(binDir)/,$(EXEC))
|
|
$(binDir)/%: %
|
|
cp $< $@
|
|
|
|
|
|
|
|
clean:
|
|
-rm -f $(LIB) $(DEBUGLIB) $(DOUBLEREPLIB) $(EXEC) $(TEST_EXEC) $(DEBUGEXEC) $(DOUBLEREPEXEC) *.o
|
|
|
|
|
|
ifneq ($(wildcard make.dep), make.dep)
|
|
make.dep: depend
|
|
endif
|
|
|
|
|
|
depend makedep: _make.dep
|
|
@mv -f _make.dep make.dep
|
|
|
|
_make.dep: $(sources)
|
|
@echo making depend
|
|
# $(SHELL) -ec '$(CC) -MM $(CPPFLAGS) $^ | sed '\''s/\($*\)\.o[ :]*/\1.o $@ : /g'\'' > $@ ; [ -s $@ ] || rm -f $@'
|
|
# @$(SHELL) -ec '$(CC) -MM $(CPPFLAGS) $^ > $@'
|
|
@$(SHELL) -ec '$(CC) -MM $(CPPFLAGS) $^ | sed "s/\(^[^.]*\)\.o/\1.o \1.debug.o/g" > $@'
|
|
|
|
_fast:
|
|
+cd fast && make -k all
|
|
|
|
fast.% _fast.%:
|
|
+cd fast && make -k $(*)
|
|
|
|
$(libEvol):
|
|
+cd $(libDir)&&make -f Makefile all
|
|
|
|
$(libEvolDebug):
|
|
+cd $(libDir)&&make -f Makefile debug
|
|
|
|
define ggo_template
|
|
ifeq ($(wildcard $(1).ggo), $(1).ggo)
|
|
$(1): $(1)_cmdline.o
|
|
endif
|
|
endef
|
|
|
|
$(foreach exec,$(EXEC),$(eval $(call ggo_template,$(exec))))
|
|
|
|
#$(EXEC): $(addsuffix _cmdline.o,$(EXEC))
|
|
|
|
define ggo_template_debug
|
|
$(1).debug: $(1)_cmdline.debug.o
|
|
endef
|
|
|
|
$(foreach exec,$(EXEC),$(eval $(call ggo_template_debug,$(exec))))
|
|
|
|
define ggo_template_doublerep
|
|
ifeq ($(wildcard $(1).ggo), $(1).ggo)
|
|
$(1).doubleRep: $(1)_cmdline.o
|
|
endif
|
|
endef
|
|
|
|
$(foreach exec,$(EXEC),$(eval $(call ggo_template_doublerep,$(exec))))
|
|
|
|
#$(addsuffix .debug,$(EXEC)): $(addsuffix _cmdline.debug.o,$(EXEC))
|
|
|
|
%.ggo: %.args $(libDir)/evolObjs.args
|
|
cat $^ > $@
|
|
|
|
|
|
# commandline (gengetopts)
|
|
%_cmdline.h %_cmdline.c: %.ggo
|
|
$(GENGETOPT) -i$< -F$(*)_cmdline
|
|
|
|
|
|
debug: CPPFLAGS = $(CPPFLAGSDEBUG)
|
|
debug: $(addsuffix .debug,$(EXEC))
|
|
#$(addsuffix .debug,$(EXEC)): $(libEvolDebug)
|
|
pl:
|
|
echo $(LIB)
|
|
|
|
|
|
%.debug: CPPFLAGS = -g -Wall -Wno-sign-compare -I. -I../.. -DLOG
|
|
|
|
%.debug: %.o
|
|
|
|
|
|
|
|
#debug: LDLIBS = -lEvolTreeDebug
|
|
debug: LIB = $(DEBUGLIB)
|
|
|
|
%.debug: CPPFLAGS = $(CPPFLAGSDEBUG)
|
|
%.debug: LDFLAGS = $(LDFLAGSDEBUG)
|
|
#%.debug: %
|
|
# @echo "made \""$(*)"\" in debug mode"
|
|
|
|
|
|
%.debug.o: %.c
|
|
$(CC) -c $(CPPFLAGSDEBUG) $(CFLAGS) $< -o $@
|
|
|
|
%.debug.o: %.cpp
|
|
$(CXX) -c $(CPPFLAGSDEBUG) $(CXXFLAGS) $< -o $@
|
|
|
|
#$(DEBUGLIB): $(Libsources:.cpp=.debug.o) $(LibCsources:.c=.debug.o)
|
|
|
|
lib$(LIBNAME)Debug.a: $(Libsources:.cpp=.debug.o) $(LibCsources:.c=.debug.o)
|
|
ar rv $@ $?
|
|
ranlib $@
|
|
|
|
DOUBLEREPEXEC = $(EXEC:=.doubleRep)
|
|
|
|
doubleRep: LOGREP=t
|
|
doubleRep: CPPFLAGS+= -DLOGREP
|
|
doubleRep: $(DOUBLEREPLIB) $(DOUBLEREPEXEC)
|
|
# echo $@
|
|
$(DOUBLEREPEXEC): $(DOUBLEREPLIB) $(libEvolDoubleRep)
|
|
|
|
%.doubleRep.o: %.c
|
|
$(CC) -c $(CPPFLAGS) $(CFLAGS) $< -o $@
|
|
|
|
%.doubleRep.o: %.cpp
|
|
$(CXX) -c $(CPPFLAGS) $(CXXFLAGS) $< -o $@
|
|
|
|
$(DOUBLEREPLIB): $(Libsources:.cpp=.doubleRep.o) $(LibCsources:.c=.doubleRep.o)
|
|
ar rv $@ $?
|
|
ranlib $@
|
|
|
|
# DO NOT DELETE
|