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59 lines
1.4 KiB
C++
59 lines
1.4 KiB
C++
// $Id: indel.cpp 962 2006-11-07 15:13:34Z privmane $
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#include "indel.h"
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indel::indel() {}
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int indel::fromChar(const char s) const{
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switch (s) {
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case 'x' : case'X' : return 0; break;
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case '-' : case'_' : return 1; break;
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default:
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vector<string> err;
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err.push_back(" The indel sequences contained the character: ");
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err[0]+=s;
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err.push_back(" Indel was not one of the following: ");
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err.push_back(" -, X");
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err.push_back(" _, x");
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errorMsg::reportError(err);
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}// end of switch
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return -99; // never suppose to be here.
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}// end of function
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vector<int> indel::fromString(const string &str) const {
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vector<int> vec;
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for (int i=0;i<str.size();i++)
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vec.push_back(fromChar(str[i]));
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return vec;
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}
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string indel::fromInt(const int in_id) const{
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char res = 0;
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switch (in_id) {
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case 0 : res = 'X' ; break;
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case 1 : res = '-' ; break;
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default:
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vector<string> err;
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err.push_back("unable to print indel_id. indel_id was not one of the following: ");
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err.push_back("X, -");
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err.push_back("x, _");
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errorMsg::reportError(err);
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}//end of switch
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string vRes;
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vRes.append(1,res);
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return vRes;
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}// end of function
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// There are no relations here.
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int indel::relations(const int charInSeq, const int charToCheck) const{
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if (charInSeq == charToCheck)
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return 1;
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return 0;
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}
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int indel::fromChar(const string& str, const int pos) const{
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return fromChar(str[pos]);
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}
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