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34 lines
961 B
C++
34 lines
961 B
C++
#ifndef SAMPLE_SEQUENCES_H
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#define SAMPLE_SEQUENCES_H
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#include "definitions.h"
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#include "distanceMethod.h"
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#include "sequenceContainer.h"
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#include "pDistance.h"
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class sampleSequences{
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public:
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explicit sampleSequences(sequenceContainer &sc);
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virtual ~sampleSequences() {};
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sequenceContainer sampleFarthestSequences(int n, distanceMethod *dm);
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//sampleRandomSequences: samples seqNum sequences from the sequence container
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sequenceContainer sampleRandomSequences(int seqNum);
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//sampleRandomCharacters: samples seqLen characters from the sequenceContainer
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sequenceContainer sampleRandomCharacters(int seqLen);
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private:
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int findNextSeq(vector<int> &sampled);
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void setDistance(int i,int j,MDOUBLE dist);
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MDOUBLE getDistance(int i,int j);
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void removeSequenceWithGap();
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sequenceContainer removeSequences(sequenceContainer &sc);
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void printDistances();
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private:
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VVdouble _distances;
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sequenceContainer _sc;
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};
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#endif
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