mirror of
http://43.156.76.180:8026/YuuMJ/EukPhylo.git
synced 2025-12-27 05:20:24 +08:00
15 lines
764 B
Bash
15 lines
764 B
Bash
#!/bin/bash
|
|
## Last updated Jan 2025 by Auden Cote-L'Heureux
|
|
|
|
## This script is intended to be used to process genomic CDS with EukPhylo part 1 on an HPC that uses the Slurm workload manager.
|
|
## The first part of the script are Slurm-specific parameters that should be adjusted by users to fit their resource allocation
|
|
## needs and restrictions, followed by some example commands taken from the GitHub Wiki, more detail for which can be found
|
|
## here: https://github.com/Katzlab/EukPhylo/wiki/EukPhylo-Part-1:-GF-assignment
|
|
|
|
|
|
## Example run command
|
|
|
|
# Start at script 1 and go through script 5 (the final script) using the Universal genetic code
|
|
python3 Scripts/wrapper.py -1 1 -2 5 --cds Input -o Output --genetic_code Universal --databases Databases > log.out
|
|
|