mirror of
http://43.156.76.180:8026/YuuMJ/EukPhylo.git
synced 2025-12-28 07:10:24 +08:00
52 lines
1.6 KiB
C++
52 lines
1.6 KiB
C++
/* ***** ***** ***** ***** ***** ***** ***** ***** ***** ***** ***** ***** *****
|
|
***** ***** ***** ***** ***** ***** ***** ***** ***** ***** ***** ***** *****
|
|
|
|
trimAl v1.4: a tool for automated alignment trimming in large-scale
|
|
phylogenetics analyses.
|
|
|
|
2009-2015 Capella-Gutierrez S. and Gabaldon, T.
|
|
[scapella, tgabaldon]@crg.es
|
|
|
|
This file is part of trimAl
|
|
|
|
trimAl is free software: you can redistribute it and/or modify
|
|
it under the terms of the GNU General Public License as published by
|
|
the Free Software Foundation, the last available version.
|
|
|
|
trimAl is distributed in the hope that it will be useful,
|
|
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
|
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
|
GNU General Public License for more details.
|
|
|
|
You should have received a copy of the GNU General Public License
|
|
along with trimAl. If not, see <http://www.gnu.org/licenses/>.
|
|
|
|
***** ***** ***** ***** ***** ***** ***** ***** ***** ***** ***** ***** *****
|
|
***** ***** ***** ***** ***** ***** ***** ***** ***** ***** ***** ***** ***** */
|
|
|
|
#ifndef COMPAREFILES_H
|
|
#define COMPAREFILES_H
|
|
|
|
#include <stdlib.h>
|
|
|
|
#include <string>
|
|
#include <iostream>
|
|
|
|
#include "alignment.h"
|
|
|
|
class compareFiles {
|
|
|
|
public:
|
|
|
|
static void printStatisticsFileColumns(int, float *);
|
|
|
|
static void printStatisticsFileAcl(int, float *);
|
|
|
|
static bool applyWindow(int, int, float *);
|
|
|
|
static int algorithm(alignment **, char **, float *, int, bool);
|
|
|
|
static bool forceComparison(alignment **, int, alignment *, float *);
|
|
};
|
|
#endif
|