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111 lines
2.1 KiB
Makefile
111 lines
2.1 KiB
Makefile
#! /usr/local/bin/gmake
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# makfile for yaep5
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Libsources=
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# do not use: fromInstructionFile.cpp
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bootstrap_prog: bootstrap_prog_cmdline.o
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.SECONDARY: bootstrap_prog_cmdline.h bootstrap_prog_cmdline.c
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LibCsources=
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# LibCsources += getopt.c getopt1.c
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EXEC = bootstrap_prog
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TEST_EXEC_SUB =
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TEST_EXEC = $(addprefix tests/,$(TEST_EXEC_SUB))
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LIB =
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#CC=g++
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CXX=g++
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CC=$(CXX)
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#GENGETOPT=/cs/++/phd/ninio/gengetopt-2.7/src/gengetopt
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GENGETOPT=gengetopt
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libDir=../lib
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#LDFLAGS=
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BASICCPPFLAGS = -Wall -Wno-sign-compare -I. -I$(libDir) -I.. -DLOG -ftemplate-depth-25
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CPPFLAGS= -O3 $(BASICCPPFLAGS)
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CPPFLAGS+= -I/usr/include/g++-v3
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#CPPFLAGS+= -DLOG -DLOGCLS -DMEMCHK
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# sources
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sources= $(Libsources) $(LibCsources) $(addsuffix .cpp,$(EXEC) $(TEST_EXEC))
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.PHONY: tests lib test dat debug %.debug
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all: $(EXEC)
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test: tests
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+cd tests; make -k test
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debug: CPPFLAGS = -g $(BASICCPPFLAGS)
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debug: all
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%.debug: CPPFLAGS = -g $(BASICCPPFLAGS)
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%.debug: %
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@echo "made \""$(*)"\" in debug mode"
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lib: $(LIB)
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$(LIB): $(Libsources:.cpp=.o) $(LibCsources:.c=.o)
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ar rv $@ $?
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ranlib $@
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tags: *.cpp *.h
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etags --members --language=c++ $^
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$(EXEC) $(TEST_EXEC): ../libSEMPHY.a $(libDir)/libEvolTree.a
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tests: $(TEST_EXEC)
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include make.dep
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install:
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cd ../fast; make -f Makefile.lib install_do
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clean:
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-rm -f $(LIB) $(EXEC) $(TEST_EXEC) *.o
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depend makedep: _make.dep
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@mv -f _make.dep make.dep
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_make.dep: $(sources)
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@echo making depend
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# $(SHELL) -ec '$(CC) -MM $(CPPFLAGS) $^ | sed '\''s/\($*\)\.o[ :]*/\1.o $@ : /g'\'' > $@ ; [ -s $@ ] || rm -f $@'
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@$(SHELL) -ec '$(CC) -MM $(CPPFLAGS) $^ > $@'
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_fast:
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cd ../fast;make -f Makefile.lib -k all
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fast.% _fast.%:
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cd ../fast;make -f Makefile.lib -k $(*)
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# commandline (gengetopts)
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%_cmdline.h %_cmdline.c: %.ggo
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$(GENGETOPT) $(GENGETOPTFLAGS) -i$< -F$(*)_cmdline -f $(*)_cmdline_parser --arg-struct-name=$(*)_args_info
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#%.h %.c: %.ggo
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# $(GENGETOPT) --file-name=$(*) -i$<
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%.dat.q: %.dat
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awk 'BEGIN{RS="[\n\r]+";};{print "\" "$$0" \"\r"}' $< > $@
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# cat $@
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DAT = cpREV45.dat.q dayhoff.dat.q jones.dat.q mtREV24.dat.q wag.dat.q
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dat: $(DAT)
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cleandat:
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rm $(DAT)
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datMatrixHolder.o: $(DAT)
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.PRECIOUS: $(DAT)
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# DO NOT DELETE
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