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46 lines
1.5 KiB
C++
46 lines
1.5 KiB
C++
#ifndef ___unObservableData___GL
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#define ___unObservableData___GL
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#include "definitions.h"
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#include "tree.h"
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#include "stochasticProcess.h"
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#include "sequenceContainer.h"
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#include "gainLossAlphabet.h"
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#include "computePijComponent.h"
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/********************************************************************************************
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unObservableData
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*********************************************************************************************/
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class unObservableData{
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public:
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explicit unObservableData(const sequenceContainer& sc,const stochasticProcess* sp ,const gainLossAlphabet alph, const int minNumOfOnes, const int minNumOfZeros);
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unObservableData(const unObservableData& other); //const
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virtual ~unObservableData(){};
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virtual unObservableData* clone() const {return new unObservableData(*this);}
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Vdouble* getpLforMissingDataPerCat();
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Vdouble getLforMissingDataPerCat();
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MDOUBLE getlogLforMissingData();
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int getNumOfUnObservablePatterns();
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void setLforMissingData(const tree& _tr, const stochasticProcess* _sp);
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//void setLforMissingData(const tree& _tr, const stochasticProcess* _sp);
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void setLforMissingData(const tree& _tr, const vector<vector<stochasticProcess*> >& spVVec, const distribution * distGain, const distribution* distLoss);
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//MDOUBLE getCorrectedLikelihood(MDOUBLE likePre){return }
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protected:
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//func
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protected:
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//members
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sequenceContainer _scZero;
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Vdouble _LforMissingDataPerCat; // used foreach rate category
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MDOUBLE _logLforMissingData;
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computePijGam _pi;
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};
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#endif
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