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36 lines
1.5 KiB
C++
36 lines
1.5 KiB
C++
#ifndef ___GAMMA_DIST_PLUSINV
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#define ___GAMMA_DIST_PLUSINV
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/************************************************************
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This class describes a combination of a predefined dsitrubtion ,
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with an additional invariant category of probability _Pinv
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This category is always the last rate category (i.e., rate(categories()) == 0)
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************************************************************/
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#include "definitions.h"
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#include "distributionPlusInvariant.h"
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#include "distribution.h"
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#include "gammaDistribution.h"
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#include "errorMsg.h"
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#include "gammaUtilities.h"
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#include "logFile.h"
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#include <cmath>
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class gammaDistributionPlusInvariant : public distributionPlusInvariant {
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public:
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explicit gammaDistributionPlusInvariant(distribution* pDist, const MDOUBLE pInv, const MDOUBLE globalRate=1, MDOUBLE rateInvariantVal=1e-10): distributionPlusInvariant(pDist,pInv,globalRate,rateInvariantVal){}
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explicit gammaDistributionPlusInvariant();
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gammaDistributionPlusInvariant(const gammaDistributionPlusInvariant& other) {(*this) = other;}
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//virtual gammaDistributionPlusInvariant& operator=(const gammaDistributionPlusInvariant& other);
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gammaDistributionPlusInvariant* clone() const {return new gammaDistributionPlusInvariant(*this);}
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virtual ~gammaDistributionPlusInvariant(){}
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// get GammaDistribution params
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virtual void setAlpha(MDOUBLE newAlpha) {return static_cast<gammaDistribution*>(_pBaseDist)->setAlpha(newAlpha);};
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virtual MDOUBLE getAlpha() const {return static_cast<gammaDistribution*>(_pBaseDist)->getAlpha();}
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};
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#endif
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