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29 lines
849 B
R
29 lines
849 B
R
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args<-commandArgs();
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if(length(args)!=7) {
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cat("USAGE: R --slave --args raw_data out_fig fig_width < Guidance_Plot.R\n");
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q();
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}
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raw_data <- args[4];
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out_fig <- args[5];
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x_width <- as.integer(args[6]);
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Program <-args[7];
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#Note that the args vector contains everything you wrote in the commandline. In this case:
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#args[1]: /usr/lib64/R/bin/exec/R
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#args[2]: --slave
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#args[3]: --args
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#args[4]: raw_data
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#args[5]: out_fig
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#args[5]: fig_width
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fig_width=15*x_width;
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x_thick_num=x_width/10;
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print (raw_data);
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print (out_fig);
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print (fig_width);
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guidance_col <- read.csv(file=raw_data,head=TRUE,sep=",");
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png(out_fig, width=fig_width,height=500);
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plot ( guidance_col[,1], guidance_col[,2],type="b",col = "blue",ylab=paste(Program," Score"),xlab="Column",ylim=c(0,1),xlim=c(0,x_width),xaxp=c(0,x_width,x_thick_num),yaxp=c(0,1,10));
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dev.off()
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