Katzlab dd76ab1d12 Added PTL2 Scripts
These are PTL2 files from Auden 2/9
2023-02-14 11:20:52 -05:00

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creating a bootstrap object from a file
first constractor
9 [1:1] 0 | 1 2 3 4 5 6 7 8 9
9 [2:1] 0 1 | 2 3 4 5 6 7 8 9
1 [3:1] 0 1 2 | 3 4 5 6 7 8 9
2 [4:1] 0 1 2 3 | 4 5 6 7 8 9
3 [5:1] 0 1 2 3 4 | 5 6 7 8 9
9 [2:1] 0 1 2 3 4 5 6 9 | 7 8
2 [3:1] 0 1 2 3 4 6 9 | 5 7 8
3 [2:1] 0 1 2 3 4 7 8 9 | 5 6
3 [4:1] 0 1 2 3 4 9 | 5 6 7 8
2 [3:1] 0 1 3 | 2 4 5 6 7 8 9
4 [2:1] 0 1 3 5 6 7 8 9 | 2 4
3 [2:1] 0 1 4 5 6 7 8 9 | 2 3
2 [4:1] 0 1 5 6 | 2 3 4 7 8 9
6 [4:1] 0 1 5 6 7 8 | 2 3 4 9
6 [3:1] 0 1 5 6 7 8 9 | 2 3 4
6 [3:1] 0 1 6 | 2 3 4 5 7 8 9
2 [5:1] 0 1 6 7 8 | 2 3 4 5 9
secound constractor
9 [1:1] 0 | 1 2 3 4 5 6 7 8 9
9 [2:1] 0 1 | 2 3 4 5 6 7 8 9
1 [3:1] 0 1 2 | 3 4 5 6 7 8 9
2 [4:1] 0 1 2 3 | 4 5 6 7 8 9
3 [5:1] 0 1 2 3 4 | 5 6 7 8 9
9 [2:1] 0 1 2 3 4 5 6 9 | 7 8
2 [3:1] 0 1 2 3 4 6 9 | 5 7 8
3 [2:1] 0 1 2 3 4 7 8 9 | 5 6
3 [4:1] 0 1 2 3 4 9 | 5 6 7 8
2 [3:1] 0 1 3 | 2 4 5 6 7 8 9
4 [2:1] 0 1 3 5 6 7 8 9 | 2 4
3 [2:1] 0 1 4 5 6 7 8 9 | 2 3
2 [4:1] 0 1 5 6 | 2 3 4 7 8 9
6 [4:1] 0 1 5 6 7 8 | 2 3 4 9
6 [3:1] 0 1 5 6 7 8 9 | 2 3 4
6 [3:1] 0 1 6 | 2 3 4 5 7 8 9
2 [5:1] 0 1 6 7 8 | 2 3 4 5 9
geing whights from a tree
0 1 1 0 1 0 0.111111 0 0.222222 0 0.333333 0.333333 0.333333 0 0 1 0 0 0
checkout the support of a tree
(A,(B,(H,(D,(J,(((G,E)[0.333333],(F,I)[1])[0.333333],C)[0.333333])[0.222222])[0.111111])[1])[1]);
remove the first tree from the list, and use is as bases for additional computation
9 [1:1] 0 | 1 2 3 4 5 6 7 8 9
9 [2:1] 0 1 | 2 3 4 5 6 7 8 9
3 [3:1] 0 1 2 | 3 4 5 6 7 8 9
3 [5:1] 0 1 2 3 4 | 5 6 7 8 9
9 [2:1] 0 1 2 3 4 5 6 9 | 7 8
2 [3:1] 0 1 2 3 4 6 9 | 5 7 8
3 [2:1] 0 1 2 3 4 7 8 9 | 5 6
3 [4:1] 0 1 2 3 4 9 | 5 6 7 8
1 [4:1] 0 1 2 4 | 3 5 6 7 8 9
5 [2:1] 0 1 2 5 6 7 8 9 | 3 4
3 [2:1] 0 1 3 5 6 7 8 9 | 2 4
2 [4:1] 0 1 5 6 | 2 3 4 7 8 9
6 [4:1] 0 1 5 6 7 8 | 2 3 4 9
6 [3:1] 0 1 5 6 7 8 9 | 2 3 4
6 [3:1] 0 1 6 | 2 3 4 5 7 8 9
2 [5:1] 0 1 6 7 8 | 2 3 4 5 9
0 1 1 0 1 0 0 0 0.111111 0 0.333333 0.333333 0.333333 0 0 1 0 0 0
checkout the support of the removed tree
(A,(B,(H,(D,(J,(((G,E)[0.333333],(F,I)[1])[0.333333],C)[0.333333])[0.111111]))[1])[1]);
compatability 0.5 = Majority Rule
<0,1>:1
<2,16>:1
<2,17>:1
<4,0>:1
<4,3>:1
<6,4>:0.666667
<6,14>:0.666667
<8,5>:0.666667
<8,7>:0.666667
<8,9>:0.666667
<10,8>:0.666667
<10,18>:0.666667
<11,2>:0
<11,6>:0
<11,10>:0
<11,13>:0
from the consensus
((B:1.000000,(E:1.000000,((F:1.000000,I:1.000000):1.000000,((H:1.000000,D:1.000000,J:1.000000):1.000000,C:1.000000):1.000000,G:1.000000):1.000000):1.000000):1.000000,A:1.000000);
with support
((B,(E,((F,I)[1.000000],((H,D,J)[0.666667],C)[0.666667],G))[0.666667])[1.000000],A)[1.000000];
compatability 0.1
<0,1>:1.000000
<2,16>:1.000000
<2,17>:1.000000
<4,0>:1.000000
<4,3>:1.000000
<6,5>:0.444444
<6,9>:0.444444
<8,4>:0.666667
<8,14>:0.666667
<10,6>:0.666667
<10,7>:0.666667
<11,10>:0.666667
<11,18>:0.666667
<12,11>:0.222222
<12,13>:0.222222
<15,2>:0.000000
<15,8>:0.000000
<15,12>:0.000000
from the consensus
((B:1.000000,(E:1.000000,((F:1.000000,I:1.000000):1.000000,((((H:1.000000,J:1.000000):1.000000,D:1.000000):1.000000,C:1.000000):1.000000,G:1.000000):1.000000):1.000000):1.000000):1.000000,A:1.000000);
with support
((B,(E,((F,I)[1.000000],((((H,J)[0.444444],D)[0.666667],C)[0.666667],G)[0.222222]))[0.666667])[1.000000],A)[1.000000];
compatability 0.9
<0,1>:1.000000
<2,16>:1.000000
<2,17>:1.000000
<4,0>:1.000000
<4,3>:1.000000
<6,2>:0.000000
<6,4>:0.000000
<6,5>:0.000000
<6,7>:0.000000
<6,9>:0.000000
<6,13>:0.000000
<6,14>:0.000000
<6,18>:0.000000
from the consensus
((B:1.000000,((F:1.000000,I:1.000000):1.000000,H:1.000000,D:1.000000,J:1.000000,G:1.000000,E:1.000000,C:1.000000):1.000000):1.000000,A:1.000000);
with support
((B,((F,I)[1.000000],H,D,J,G,E,C))[1.000000],A)[1.000000];
strict consensus
<0,1>:1.000000
<2,16>:1.000000
<2,17>:1.000000
<4,0>:1.000000
<4,3>:1.000000
<6,2>:0.000000
<6,4>:0.000000
<6,5>:0.000000
<6,7>:0.000000
<6,9>:0.000000
<6,13>:0.000000
<6,14>:0.000000
<6,18>:0.000000
from the consensus
((B:1.000000,((F:1.000000,I:1.000000):1.000000,H:1.000000,D:1.000000,J:1.000000,G:1.000000,E:1.000000,C:1.000000):1.000000):1.000000,A:1.000000);
with support
((B,((F,I)[1.000000],H,D,J,G,E,C))[1.000000],A)[1.000000];