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30 lines
890 B
C++
30 lines
890 B
C++
// $Id: computeMarginalAlg.h 962 2006-11-07 15:13:34Z privmane $
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#ifndef ___COMPUTE_MARGINAL_ALG
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#define ___COMPUTE_MARGINAL_ALG
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#include "definitions.h"
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#include "suffStatComponent.h"
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#include "sequenceContainer.h"
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#include "computePijComponent.h"
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// This function will give one (for DNA, for example)
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// P(A | DATA), P (C | DATA), ... etc, for each node.
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// This is the case in the homogenous model only.
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// for the Gamma case, the marginal in a specific node, is in fact
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// p(A | DATA, r), P( C | DATA, r), ... etc.
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class computeMarginalAlg {
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public:
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void fillComputeMarginal(const tree& et,
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const sequenceContainer& sc,
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const stochasticProcess& sp,
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const int pos,
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const computePijHom& pi,
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suffStatGlobalHomPos& ssc,
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const suffStatGlobalHomPos& cup,
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const suffStatGlobalHomPos& cdown,
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doubleRep & posProb);
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};
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#endif
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