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32 lines
935 B
C++
32 lines
935 B
C++
// $Id: datMatrixHolder.h 5804 2009-01-20 09:18:05Z adido $
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#ifndef ___DATMATRIXHOLDER
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#define ___DATMATRIXHOLDER
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#include <string>
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using namespace std;
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// THIS CONSTRUCT IS USED TO KEEP A STRING THAT IS THE AA SUBSTITUTION MATRIX
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// THE datMatrixString IS TO BE USED WHENEVER WE USE ONE OF THE BUILD-IN AA SUBSTITUTION MATRICES.
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class datMatrixString {
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public:
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const string Val;
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explicit datMatrixString(const char * str): Val(str){};
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};
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class datMatrixHolder {
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public:
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static const datMatrixString cpREV45;
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static const datMatrixString dayhoff;
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static const datMatrixString jones; // This is JTT
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static const datMatrixString mtREV24;
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static const datMatrixString wag;
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static const datMatrixString HIVb;
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static const datMatrixString HIVw;
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static const datMatrixString lg;
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static const datMatrixString empiriCodon; //This is the empirical matrix for codon by gina and adrian
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};
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#endif // ___DATMATRIXHOLDER
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